Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 3.6e-169 598.2 307 100.0
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 1.5e-119 433.3 258 85.7
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 1.0e-115 420.6 258 83.3
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 3.0e-115 419.1 265 81.5
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 6.6e-115 417.9 265 80.8
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 6.6e-115 417.9 265 80.8
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 8.6e-115 417.5 255 84.7
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 8.6e-115 417.5 258 82.6
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 1.1e-114 417.2 265 81.1
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 1.1e-114 417.2 265 81.1
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.1e-114 417.2 284 75.7
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.5e-114 416.8 258 82.2
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 3.3e-114 415.6 258 82.2
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 3.3e-114 415.6 258 82.6
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 4.3e-114 415.2 265 80.4
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 7.3e-114 414.5 258 81.8
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 7.3e-114 414.5 265 79.6
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 9.5e-114 414.1 258 82.2
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 9.5e-114 414.1 258 82.2
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.2e-113 413.7 284 75.7
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 1.6e-113 413.3 265 78.9
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 1.6e-113 413.3 266 80.8
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 1.6e-113 413.3 265 80.0
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 2.8e-113 412.5 265 80.4
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 2.8e-113 412.5 258 81.0
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 2.8e-113 412.5 265 80.0
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 2.8e-113 412.5 258 81.0
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.6e-113 412.1 264 80.3
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 3.6e-113 412.1 257 82.1
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 3.6e-113 412.1 258 81.0
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 3.6e-113 412.1 258 81.0
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 4.7e-113 411.8 265 80.0
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 4.7e-113 411.8 265 79.6
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 4.7e-113 411.8 265 80.0
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 6.2e-113 411.4 258 81.0
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 6.2e-113 411.4 258 80.6
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 6.2e-113 411.4 258 80.6
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 8.1e-113 411.0 258 80.6
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.1e-112 410.6 265 79.6
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.1e-112 410.6 265 80.0
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 1.4e-112 410.2 265 80.0
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.4e-112 410.2 265 78.9
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 1.4e-112 410.2 258 80.6
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 3.1e-112 409.1 265 80.0
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.1e-112 409.1 265 80.0
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.1e-112 409.1 265 80.0
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 3.1e-112 409.1 265 80.0
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 4.0e-112 408.7 265 79.6
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 4.0e-112 408.7 255 81.2
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 5.2e-112 408.3 258 80.6
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 6.8e-112 407.9 258 80.2
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 6.8e-112 407.9 265 79.6
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 8.9e-112 407.5 265 78.5
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.2e-111 407.1 265 77.4
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 1.2e-111 407.1 265 79.2
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 1.2e-111 407.1 265 79.6
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 1.5e-111 406.8 265 79.2
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 1.5e-111 406.8 258 80.2
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 2.0e-111 406.4 258 79.8
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.6e-111 406.0 265 78.9
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 2.6e-111 406.0 265 78.9
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 3.4e-111 405.6 258 80.2
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 3.4e-111 405.6 258 79.8
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 3.4e-111 405.6 258 80.6
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 4.4e-111 405.2 265 77.0
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 4.4e-111 405.2 258 81.0
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 5.8e-111 404.8 258 79.5
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 5.8e-111 404.8 265 79.2
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 5.8e-111 404.8 265 78.1
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 7.6e-111 404.4 265 78.9
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 9.9e-111 404.1 258 79.8
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 9.9e-111 404.1 265 78.9
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 9.9e-111 404.1 265 78.9
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 9.9e-111 404.1 267 78.7
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 9.9e-111 404.1 265 78.9
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 1.3e-110 403.7 258 79.8
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 1.3e-110 403.7 265 78.5
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 1.3e-110 403.7 265 78.9
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 1.3e-110 403.7 265 78.9
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 1.7e-110 403.3 265 79.2
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 1.7e-110 403.3 258 79.5
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 1.7e-110 403.3 258 79.5
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.7e-110 403.3 265 78.5
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 1.7e-110 403.3 267 78.7
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.9e-110 402.5 265 78.1
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 2.9e-110 402.5 265 78.1
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 2.9e-110 402.5 265 78.5
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 3.7e-110 402.1 265 78.9
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 3.7e-110 402.1 265 78.5
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 1.1e-109 400.6 265 77.7
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.9e-109 399.8 258 77.5
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 2.4e-109 399.4 267 78.3
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 3.2e-109 399.1 265 78.1
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 4.1e-109 398.7 258 79.1
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 7.1e-109 397.9 265 77.4
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 1.2e-108 397.1 255 78.8
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 3.5e-108 395.6 265 77.0
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 3.5e-108 395.6 265 77.0
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 3.5e-108 395.6 265 77.0
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 7.8e-108 394.4 265 77.0
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 1.0e-107 394.0 256 78.9
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.7e-107 393.3 265 78.1
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 3.0e-107 392.5 244 82.4
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 3.0e-107 392.5 249 79.1
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 5.1e-107 391.7 315 67.6
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.9e-106 389.8 258 77.1
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 9.6e-106 387.5 265 75.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 9.6e-106 387.5 265 75.5
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 9.6e-106 387.5 265 75.5
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 4.7e-105 385.2 280 72.9
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 4.0e-104 382.1 241 80.1
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 1.5e-103 380.2 287 70.4
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 2.0e-103 379.8 269 74.7
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 6.4e-102 374.8 242 79.3
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 8.7e-99 364.4 270 71.1
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 4.2e-93 345.5 220 77.7
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.2e-92 344.0 265 70.2
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.2e-92 344.0 265 70.2
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.3e-89 334.0 205 81.0
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 1.2e-87 327.4 210 82.4
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 2.7e-84 316.2 198 80.3
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 4.3e-82 308.9 214 77.6
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.8e-80 303.5 191 84.8
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 5.3e-80 302.0 257 65.4
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 9.0e-80 301.2 264 62.1
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 1.6e-73 280.4 272 57.0
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 8.2e-73 278.1 166 81.3
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.8e-72 276.9 308 52.3
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 2.9e-70 269.6 175 76.0
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 3.0e-67 259.6 306 49.3
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 2.2e-65 253.4 257 54.5
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 3.1e-64 249.6 222 65.3
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 9.1e-64 248.1 182 74.7
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 9.1e-64 248.1 182 74.7
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 2.2e-62 243.4 144 79.9
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 1.8e-59 233.8 266 51.9
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 4.2e-53 212.6 287 41.8
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 9.4e-53 211.5 157 73.9
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 2.7e-52 209.9 157 72.0
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 3.0e-43 179.9 88 97.7
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 5.9e-39 165.6 92 95.7
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 7.7e-39 165.2 117 78.6
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 2.4e-32 143.7 110 61.8
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 5.9e-31 139.0 92 82.6
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 1.0e-27 128.3 249 35.7
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 6.8e-19 99.0 103 59.2
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 3.2e-16 90.1 89 61.8
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 7.8e-15 85.5 51 88.2
ECA246G3223 Erigeron canadensis HOM05D001124 ORTHO05D001004 2.6e-10 70.5 57 66.7
SalBow4G0084 Salvia bowleyana HOM05D000136 ORTHO05D000080 6.6e-06 55.8 48 56.2


User provided reference genes

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