Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_12778 Sequoiadendron giganteum HOM05D003441 ORTHO05D022097 2.3e-210 735.3 374 100.0
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 9.3e-79 298.1 190 78.4
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 2.1e-78 297.0 190 81.1
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 3.0e-77 293.1 190 80.0
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 5.1e-77 292.4 197 77.2
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 4.3e-76 289.3 192 77.1
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 7.4e-76 288.5 199 76.9
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 7.4e-76 288.5 193 78.2
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 7.4e-76 288.5 192 76.0
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 1.6e-75 287.3 194 76.8
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 2.8e-75 286.6 192 77.1
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 4.8e-75 285.8 194 77.3
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 6.2e-75 285.4 192 75.5
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 3.1e-74 283.1 193 75.6
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 4.0e-74 282.7 192 76.6
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 4.0e-74 282.7 191 75.9
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 5.3e-74 282.3 195 75.4
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 9.0e-74 281.6 190 77.4
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 1.2e-73 281.2 191 77.0
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 1.2e-73 281.2 191 77.0
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 1.5e-73 280.8 191 75.4
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 1.5e-73 280.8 191 77.0
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 1.5e-73 280.8 192 76.0
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 2.0e-73 280.4 190 76.3
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 3.4e-73 279.6 190 75.8
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 3.4e-73 279.6 203 72.9
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 5.8e-73 278.9 214 70.1
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 9.9e-73 278.1 193 75.6
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 9.9e-73 278.1 191 75.9
SalBow1G5824 Salvia bowleyana HOM05D003441 ORTHO05D004516 9.9e-73 278.1 191 75.9
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 1.7e-72 277.3 189 74.6
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 3.8e-72 276.2 191 74.9
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 4.9e-72 275.8 195 72.8
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 4.9e-72 275.8 191 74.9
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 4.9e-72 275.8 191 74.9
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 8.4e-72 275.0 191 74.9
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 8.4e-72 275.0 192 75.0
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 8.4e-72 275.0 194 72.7
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 1.4e-71 274.2 192 76.0
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 1.9e-71 273.9 191 74.9
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 1.9e-71 273.9 205 73.2
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.9e-71 273.9 191 74.9
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 2.5e-71 273.5 194 74.2
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 3.2e-71 273.1 166 81.9
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 4.2e-71 272.7 194 72.7
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 4.2e-71 272.7 190 73.2
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 7.1e-71 271.9 189 74.1
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 7.1e-71 271.9 190 76.3
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 1.6e-70 270.8 194 72.7
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 2.7e-70 270.0 195 70.8
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 2.7e-70 270.0 195 70.8
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 2.7e-70 270.0 189 74.6
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 3.5e-70 269.6 190 73.2
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 4.6e-70 269.2 193 71.0
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 4.6e-70 269.2 197 72.6
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 6.0e-70 268.9 192 74.5
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 7.9e-70 268.5 194 71.6
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.0e-69 268.1 194 72.2
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 1.0e-69 268.1 189 72.5
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 1.0e-69 268.1 198 72.2
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 1.3e-69 267.7 189 72.5
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 1.3e-69 267.7 193 71.0
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 1.3e-69 267.7 194 70.6
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.8e-69 267.3 211 68.7
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 2.3e-69 266.9 191 73.8
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 3.0e-69 266.5 195 71.8
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 5.1e-69 265.8 203 71.9
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 6.7e-69 265.4 189 71.4
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 1.1e-68 264.6 191 70.7
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 1.5e-68 264.2 166 79.5
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 3.3e-68 263.1 191 74.9
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 3.3e-68 263.1 191 72.8
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 3.3e-68 263.1 190 73.7
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 4.3e-68 262.7 175 77.1
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 5.6e-68 262.3 190 72.1
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 7.4e-68 261.9 190 74.2
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 9.6e-68 261.5 156 83.3
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 9.6e-68 261.5 191 74.3
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.3e-67 261.2 191 74.9
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 1.6e-67 260.8 191 74.3
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 2.1e-67 260.4 186 71.5
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.1e-67 260.4 191 73.8
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 2.1e-67 260.4 193 72.0
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 2.8e-67 260.0 187 74.3
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 2.8e-67 260.0 191 69.6
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 4.8e-67 259.2 196 70.4
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.2e-67 258.8 190 74.7
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.2e-67 258.8 191 73.3
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 8.2e-67 258.5 181 72.4
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 1.1e-66 258.1 213 66.7
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 1.4e-66 257.7 193 72.0
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 1.4e-66 257.7 192 72.9
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 1.4e-66 257.7 189 73.0
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 4.0e-66 256.1 142 86.6
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 4.0e-66 256.1 142 86.6
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 6.9e-66 255.4 195 72.8
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 9.0e-66 255.0 149 84.6
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 2.6e-65 253.4 194 70.6
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 4.5e-65 252.7 194 70.6
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 5.8e-65 252.3 193 72.5
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 7.6e-65 251.9 195 70.8
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 7.6e-65 251.9 190 70.0
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 1.7e-64 250.8 192 71.4
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 3.8e-64 249.6 189 70.4
SHI07186 Sapria himalayana HOM05D003441 ORTHO05D004516 6.5e-64 248.8 215 63.7
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 8.4e-64 248.4 192 69.3
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 3.2e-63 246.5 191 68.6
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 3.2e-63 246.5 185 73.0
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.2e-62 244.6 219 61.6
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 1.2e-62 244.6 143 83.9
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 1.2e-62 244.6 143 83.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 1.6e-62 244.2 166 77.7
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 2.7e-62 243.4 191 71.2
MBI04_g35068_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 2.7e-62 243.4 168 76.2
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 2.7e-62 243.4 191 70.7
TPR.G33074 Trifolium pratense HOM05D003441 ORTHO05D004516 4.6e-62 242.7 136 88.2
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 6.0e-62 242.3 198 66.7
BcaC08g44523 Brassica carinata HOM05D003441 ORTHO05D004516 1.8e-61 240.7 162 75.9
FAN06G4150 Fragaria x ananassa HOM05D003441 ORTHO05D022097 1.8e-61 240.7 161 77.6
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 3.0e-61 240.0 191 70.2
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.7e-61 238.4 204 65.2
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.7e-60 235.7 191 68.1
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 7.4e-60 235.3 191 68.6
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 9.7e-60 235.0 144 81.2
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 2.8e-59 233.4 168 71.4
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 2.8e-59 233.4 191 67.5
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 3.7e-59 233.0 166 74.1
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 4.8e-59 232.6 192 65.6
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 8.2e-59 231.9 178 70.2
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 5.3e-58 229.2 187 67.4
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 9.0e-58 228.4 164 70.1
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.2e-57 228.0 203 61.6
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 1.5e-57 227.6 188 64.9
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 4.5e-57 226.1 165 72.7
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 5.9e-57 225.7 194 60.3
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 1.0e-56 224.9 180 66.7
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 1.3e-56 224.6 186 66.7
COL.COLO4_31600 Corchorus olitorius HOM05D003441 ORTHO05D022097 3.6e-54 216.5 111 92.8
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 1.4e-53 214.5 149 71.1
unitig_62.g23538 Utricularia gibba HOM05D003441 ORTHO05D004516 1.1e-52 211.5 201 60.2
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 6.5e-48 195.7 250 44.0
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 1.1e-47 194.9 152 68.4
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 4.2e-47 193.0 134 68.7
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.8e-45 185.3 141 63.8
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.5e-44 184.5 186 55.4
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.5e-44 184.5 141 63.1
FvH4_5g19430 Fragaria vesca HOM05D003441 ORTHO05D004516 1.1e-42 178.3 176 56.8
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 5.0e-40 169.5 174 52.3
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 3.2e-39 166.8 165 58.2
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 1.8e-37 161.0 122 67.2
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 1.3e-35 154.8 91 89.0
Gohir.D11G022333 Gossypium hirsutum HOM05D003441 ORTHO05D004516 2.8e-35 153.7 89 85.4
SMO163G0061 Selaginella moellendorffii HOM05D003441 ORTHO05D022097 3.7e-35 153.3 116 62.9
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.6e-33 147.9 127 64.6
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 7.7e-33 145.6 89 78.7
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 8.5e-32 142.1 93 79.6
arahy.Tifrunner.gnm1.ann1.ZIDD3N Arachis hypogaea HOM05D003441 ORTHO05D004516 2.1e-30 137.5 93 79.6
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 3.0e-29 133.7 165 43.0
SEGI_39024 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 8.5e-24 115.5 160 44.4
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 1.5e-23 114.8 187 39.6
arahy.Tifrunner.gnm1.ann1.U109MR Arachis hypogaea HOM05D003441 ORTHO05D004516 1.2e-20 105.1 93 64.5
Lsat_1_v5_gn_7_95160 Lactuca sativa HOM05D003441 ORTHO05D005003 2.6e-20 104.0 60 85.0
FAN01G2616 Fragaria x ananassa HOM05D003441 ORTHO05D022097 9.8e-20 102.1 99 57.6
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 2.7e-17 94.0 60 73.3
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 3.5e-17 93.6 77 61.0
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 3.3e-15 87.0 54 75.9
BolC6t37162H Brassica oleracea HOM05D003441 ORTHO05D022097 7.2e-15 85.9 79 59.5
BolC6t37163H Brassica oleracea HOM05D003441 ORTHO05D004516 1.5e-12 78.2 53 67.9
Actinidia14580 Actinidia chinensis HOM05D003441 ORTHO05D004516 3.4e-12 77.0 57 70.2
Lsat_1_v5_gn_1_103221 Lactuca sativa HOM05D002170 ORTHO05D005003 1.7e-11 74.7 49 73.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 8.0e-06 55.8 40 75.0


User provided reference genes

Program Settings