Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-43 179.1 90 100.0
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-17 93.2 62 71.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-17 93.2 62 71.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.7e-16 88.6 62 71.0
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.7e-16 88.6 53 75.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.5e-16 88.2 62 71.0
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 4.6e-16 87.8 61 70.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.6e-16 87.8 62 69.4
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.0e-16 87.4 63 66.7
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 6.0e-16 87.4 62 67.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 6.0e-16 87.4 62 67.7
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 6.0e-16 87.4 53 75.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 6.0e-16 87.4 62 69.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 7.8e-16 87.0 62 69.4
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 7.8e-16 87.0 62 69.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 7.8e-16 87.0 53 73.6
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.0e-15 86.7 54 72.2
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.0e-15 86.7 62 67.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.0e-15 86.7 62 67.7
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.3e-15 86.3 62 67.7
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.3e-15 86.3 53 73.6
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.3e-15 86.3 50 76.0
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.3e-15 86.3 63 68.3
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.3e-15 86.3 61 72.1
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.7e-15 85.9 63 66.7
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.3e-15 85.5 62 66.1
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.3e-15 85.5 53 71.7
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-15 85.5 53 73.6
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.3e-15 85.5 62 66.1
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.3e-15 85.5 62 67.7
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.3e-15 85.5 62 67.7
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 2.3e-15 85.5 53 73.6
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.3e-15 85.5 62 67.7
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.0e-15 85.1 53 73.6
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.0e-15 85.1 62 67.7
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 3.0e-15 85.1 62 66.1
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.0e-15 85.1 53 73.6
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.0e-15 85.1 62 66.1
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.0e-15 85.1 47 80.9
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.0e-15 85.1 53 73.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 3.0e-15 85.1 62 67.7
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 3.9e-15 84.7 62 67.7
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.9e-15 84.7 62 67.7
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.9e-15 84.7 62 67.7
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 3.9e-15 84.7 63 66.7
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 5.1e-15 84.3 62 66.1
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 5.1e-15 84.3 62 67.7
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 5.1e-15 84.3 62 64.5
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 5.1e-15 84.3 62 64.5
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 5.1e-15 84.3 62 66.1
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 5.1e-15 84.3 62 67.7
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 5.1e-15 84.3 53 71.7
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 6.6e-15 84.0 62 66.1
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 6.6e-15 84.0 62 66.1
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 8.7e-15 83.6 62 67.7
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 8.7e-15 83.6 45 82.2
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 8.7e-15 83.6 63 66.7
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 8.7e-15 83.6 62 66.1
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 8.7e-15 83.6 62 66.1
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.1e-14 83.2 62 66.1
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.1e-14 83.2 71 60.6
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.1e-14 83.2 63 65.1
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.1e-14 83.2 63 65.1
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.5e-14 82.8 53 69.8
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.5e-14 82.8 62 66.1
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.5e-14 82.8 53 71.7
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.5e-14 82.8 53 71.7
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.5e-14 82.8 62 64.5
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.5e-14 82.8 71 60.6
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.5e-14 82.8 53 69.8
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.5e-14 82.8 68 61.8
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.5e-14 82.8 62 64.5
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.5e-14 82.8 62 64.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.5e-14 82.8 62 64.5
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.9e-14 82.4 53 67.9
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.9e-14 82.4 53 69.8
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.5e-14 82.0 62 67.7
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.5e-14 82.0 53 71.7
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.5e-14 82.0 62 64.5
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.5e-14 82.0 62 64.5
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 2.5e-14 82.0 62 64.5
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.5e-14 82.0 53 69.8
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.3e-14 81.6 63 63.5
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 4.3e-14 81.3 62 64.5
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.3e-14 81.3 62 64.5
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.3e-14 81.3 62 62.9
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 5.6e-14 80.9 45 77.8
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 5.6e-14 80.9 62 62.9
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 5.6e-14 80.9 62 62.9
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 5.6e-14 80.9 66 62.1
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 5.6e-14 80.9 45 80.0
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 9.6e-14 80.1 62 62.9
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 9.6e-14 80.1 62 64.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 9.6e-14 80.1 62 64.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.2e-13 79.7 53 67.9
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.6e-13 79.3 66 60.6
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.6e-13 79.3 45 80.0
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.6e-13 79.3 62 64.5
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.8e-13 78.6 75 57.3
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.6e-13 78.2 45 77.8
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.1e-12 76.6 47 74.5
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.4e-12 76.3 45 73.3
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.1e-12 75.1 62 59.7
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.1e-12 75.1 45 75.6
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.0e-11 72.4 53 60.4
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.0e-11 72.4 52 67.3
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.0e-11 72.4 52 59.6
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 2.0e-11 72.4 50 62.0
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 7.6e-11 70.5 62 58.1
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 9.9e-11 70.1 54 53.7
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.7e-10 69.3 45 66.7
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.2e-10 68.9 45 73.3
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 6.4e-10 67.4 45 68.9
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 6.4e-10 67.4 45 68.9
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 6.4e-10 67.4 45 68.9
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 1.9e-09 65.9 56 53.6
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 3.2e-09 65.1 45 68.9
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 3.2e-09 65.1 62 58.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 7.1e-09 63.9 45 66.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 7.1e-09 63.9 52 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 3.5e-08 61.6 52 50.0
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 3.5e-08 61.6 61 52.5
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 6.0e-08 60.8 85 43.5
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.3e-07 59.7 48 60.4
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.6e-07 57.4 108 35.2


User provided reference genes

Program Settings