Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08707 Sequoiadendron giganteum HOM05D002702 ORTHO05D003416 5.9e-83 310.8 158 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 4.3e-17 92.0 149 40.9
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 1.6e-16 90.1 75 57.3
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 2.8e-16 89.4 73 57.5
Oeu044210.1 Olea europaea HOM05D002702 ORTHO05D003416 2.8e-16 89.4 66 63.6
SMO196G0286 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 1.4e-15 87.0 94 47.9
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 5.2e-15 85.1 60 61.7
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 6.8e-15 84.7 114 43.0
Ah.04g159560 Amaranthus hybridus HOM05D002702 ORTHO05D003416 1.2e-14 84.0 53 67.9
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 2.6e-14 82.8 85 50.6
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 3.4e-14 82.4 51 68.6
CBR_g30840 Chara braunii HOM05D002702 ORTHO05D003416 4.4e-14 82.0 67 58.2
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 5.8e-14 81.6 64 57.8
CBR_g31712 Chara braunii HOM05D002702 ORTHO05D003416 5.8e-14 81.6 67 59.7
Mapoly0001s0017 Marchantia polymorpha HOM05D002702 ORTHO05D003416 5.8e-14 81.6 86 47.7
Nitab4.5_0015985g0010 Nicotiana tabacum HOM05D002702 ORTHO05D003416 5.8e-14 81.6 63 60.3
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 7.5e-14 81.3 108 41.7
AUR62005908 Chenopodium quinoa HOM05D002702 ORTHO05D003416 7.5e-14 81.3 49 69.4
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 7.5e-14 81.3 54 64.8
QL05p014746 Quercus lobata HOM05D002702 ORTHO05D003416 7.5e-14 81.3 49 69.4
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 9.8e-14 80.9 59 61.0
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 9.8e-14 80.9 49 67.3
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.3e-13 80.5 59 61.0
AUR62028157 Chenopodium quinoa HOM05D002702 ORTHO05D003416 1.3e-13 80.5 65 60.0
Nitab4.5_0000175g0200 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.3e-13 80.5 65 55.4
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 1.7e-13 80.1 64 56.2
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 2.2e-13 79.7 102 43.1
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 2.9e-13 79.3 123 43.9
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 3.7e-13 79.0 76 47.4
QL05p040842 Quercus lobata HOM05D002702 ORTHO05D003416 3.7e-13 79.0 117 40.2
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 4.9e-13 78.6 100 44.0
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 4.9e-13 78.6 141 39.7
SMO117G0141 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 6.4e-13 78.2 66 54.5
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 6.4e-13 78.2 112 42.9
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 6.4e-13 78.2 112 42.9
SalBow2G1241 Salvia bowleyana HOM05D002702 ORTHO05D003416 8.3e-13 77.8 67 55.2
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 1.1e-12 77.4 96 44.8
Phvul.001G106433 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 1.4e-12 77.0 54 63.0
Nitab4.5_0003719g0060 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.9e-12 76.6 59 62.7
Zm00001eb028910 Zea mays HOM05D002702 ORTHO05D003416 1.9e-12 76.6 80 43.8
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 1.9e-12 76.6 80 45.0
Zm00001eb367360 Zea mays HOM05D002702 ORTHO05D003416 1.9e-12 76.6 80 43.8
Lj1A1071G54 Lonicera japonica HOM05D002702 ORTHO05D003416 2.4e-12 76.3 105 39.0
VMungo1383G3011 Vigna mungo HOM05D002702 ORTHO05D003416 3.2e-12 75.9 94 46.8
Phvul.001G053501 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 4.1e-12 75.5 72 55.6
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 4.1e-12 75.5 80 43.8
Gorai.002G122000 Gossypium raimondii HOM05D002702 ORTHO05D003416 5.4e-12 75.1 65 56.9
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 5.4e-12 75.1 81 50.6
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 7.1e-12 74.7 119 36.1
Gorai.003G097500 Gossypium raimondii HOM05D002702 ORTHO05D022789 1.2e-11 73.9 65 55.4
Nitab4.5_0000322g0190 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.2e-11 73.9 109 43.1
Gorai.001G250500 Gossypium raimondii HOM05D002702 ORTHO05D003416 1.6e-11 73.6 65 53.8
Peaxi162Scf00793g00323 Petunia axillaris HOM05D002702 ORTHO05D003416 1.6e-11 73.6 139 42.4
Zm00001eb210060 Zea mays HOM05D002702 ORTHO05D003416 1.6e-11 73.6 80 42.5
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 2.1e-11 73.2 106 45.3
arahy.Tifrunner.gnm1.ann1.LW5WEF Arachis hypogaea HOM05D002702 ORTHO05D003416 2.1e-11 73.2 106 45.3
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 2.7e-11 72.8 75 49.3
Gohir.D03G093500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 3.5e-11 72.4 65 55.4
Medtr7g086730 Medicago truncatula HOM05D002702 ORTHO05D003416 3.5e-11 72.4 64 56.2
SEGI_08517 Sequoiadendron giganteum HOM05D008523 ORTHO05D010723 3.5e-11 72.4 37 97.3
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 3.5e-11 72.4 52 63.5
CAN.G388.55 Capsicum annuum HOM05D002702 ORTHO05D003416 6.0e-11 71.6 133 37.6
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 6.0e-11 71.6 49 61.2
Gohir.D06G171600 Gossypium hirsutum HOM05D002702 ORTHO05D003416 7.8e-11 71.2 65 53.8
Gorai.001G205000 Gossypium raimondii HOM05D002702 ORTHO05D003416 7.8e-11 71.2 65 55.4
FAN13G2753 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.0e-10 70.9 58 55.2
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.0e-10 70.9 111 41.4
Lalb_Chr14g0370781 Lupinus albus HOM05D002702 ORTHO05D003416 1.0e-10 70.9 53 58.5
AL4G44180 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 1.3e-10 70.5 127 38.6
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 1.3e-10 70.5 76 51.3
MD04G1033900 Malus domestica HOM05D002702 ORTHO05D003416 1.3e-10 70.5 73 50.7
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.3e-10 69.7 111 41.4
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 2.3e-10 69.7 98 43.9
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 2.3e-10 69.7 111 41.4
Ca_08321_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 3.0e-10 69.3 93 45.2
Psat3g086200 Pisum sativum HOM05D002702 ORTHO05D003416 3.0e-10 69.3 104 39.4
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 3.9e-10 68.9 91 45.1
FAN08G0285 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.9e-10 68.9 58 53.4
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 3.9e-10 68.9 98 43.9
MCO16G125 Micromonas commoda HOM05D002702 ORTHO05D003416 3.9e-10 68.9 56 57.1
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 3.9e-10 68.9 56 53.6
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 5.1e-10 68.6 53 58.5
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 5.1e-10 68.6 125 35.2
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 5.1e-10 68.6 87 41.4
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 6.6e-10 68.2 88 48.9
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 6.6e-10 68.2 105 43.8
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 6.6e-10 68.2 111 40.5
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 6.6e-10 68.2 58 53.4
FAN18G3773 Fragaria x ananassa HOM05D002702 ORTHO05D003416 6.6e-10 68.2 58 53.4
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 6.6e-10 68.2 55 58.2
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 8.6e-10 67.8 50 58.0
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 8.6e-10 67.8 62 50.0
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 8.6e-10 67.8 55 58.2
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 8.6e-10 67.8 66 54.5
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 8.6e-10 67.8 56 60.7
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 1.1e-09 67.4 85 44.7
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 1.1e-09 67.4 72 47.2
AT3G09360 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 1.5e-09 67.0 84 40.5
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 1.5e-09 67.0 96 44.8
AL357U10010 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 1.9e-09 66.6 81 45.7
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 2.5e-09 66.2 144 36.1
TPR.G34790 Trifolium pratense HOM05D002702 ORTHO05D003416 2.5e-09 66.2 112 38.4
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 3.3e-09 65.9 64 50.0
Thhalv10020503m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 3.3e-09 65.9 104 37.5
Thhalv10027195m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 3.3e-09 65.9 58 53.4
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 3.3e-09 65.9 62 48.4
Psat5g080560 Pisum sativum HOM05D002702 ORTHO05D003416 3.3e-09 65.9 71 50.7
AL2G39140 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 4.3e-09 65.5 93 37.6
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 4.3e-09 65.5 150 30.7
BolC4t22589H Brassica oleracea HOM05D002702 ORTHO05D003416 4.3e-09 65.5 58 50.0
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 4.3e-09 65.5 71 46.5
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.3e-09 65.5 62 48.4
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.3e-09 65.5 62 48.4
BcaC02g11927 Brassica carinata HOM05D002702 ORTHO05D003416 7.3e-09 64.7 133 33.1
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 7.3e-09 64.7 70 44.3
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 9.5e-09 64.3 61 50.8
BolC4t21688H Brassica oleracea HOM05D002702 ORTHO05D003416 9.5e-09 64.3 58 48.3
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 9.5e-09 64.3 80 41.2
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 9.5e-09 64.3 96 43.8
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 9.5e-09 64.3 94 39.4
Sp1g06510 Schrenkiella parvula HOM05D002702 ORTHO05D003416 9.5e-09 64.3 111 35.1
Carub.0003s0847 Capsella rubella HOM05D002702 ORTHO05D003416 1.2e-08 63.9 133 33.8
unitig_748.g8246 Utricularia gibba HOM05D002702 ORTHO05D003416 1.2e-08 63.9 68 48.5
BcaB03g11606 Brassica carinata HOM05D002702 ORTHO05D003416 1.6e-08 63.5 72 43.1
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 2.1e-08 63.2 115 39.1
CANSAT80G1653 Cannabis sativa HOM05D002702 ORTHO05D003416 2.8e-08 62.8 79 39.2
AT2G01280 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 3.6e-08 62.4 84 38.1
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 3.6e-08 62.4 85 41.2
AL5G10240 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 6.2e-08 61.6 66 43.9
AT2G45100 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 6.2e-08 61.6 127 37.0
BcaB03g11605 Brassica carinata HOM05D002702 ORTHO05D003416 6.2e-08 61.6 122 36.1
C04p09810 Brassica napus HOM05D002702 ORTHO05D003416 6.2e-08 61.6 130 34.6
Carub.0002s1026 Capsella rubella HOM05D002702 ORTHO05D003416 6.2e-08 61.6 66 42.4
FAN06G3121 Fragaria x ananassa HOM05D002702 ORTHO05D003416 6.2e-08 61.6 52 53.8
Sp3g07740 Schrenkiella parvula HOM05D002702 ORTHO05D003416 6.2e-08 61.6 73 43.8
Gohir.D09G053232 Gossypium hirsutum HOM05D002702 ORTHO05D022789 8.1e-08 61.2 58 51.7
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 8.1e-08 61.2 99 38.4
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 1.1e-07 60.8 86 38.4
C04p00530 Brassica napus HOM05D002702 ORTHO05D003416 1.1e-07 60.8 130 33.8
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 1.1e-07 60.8 138 32.6
BcaC02g12571 Brassica carinata HOM05D002702 ORTHO05D003416 1.4e-07 60.5 130 33.8
A03p35990 Brassica napus HOM05D002702 ORTHO05D003416 1.4e-07 60.5 59 49.2
BraA03t12771Z Brassica rapa HOM05D002702 ORTHO05D003416 1.4e-07 60.5 59 49.2
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 1.4e-07 60.5 73 41.1
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.8e-07 60.1 122 35.2
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 1.8e-07 60.1 105 39.0
CSS0039994 Camellia sinensis var. sinensis HOM05D002702 ORTHO05D003416 4.0e-07 58.9 92 44.6
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 4.0e-07 58.9 56 53.6
SHI21356 Sapria himalayana HOM05D002702 ORTHO05D000023 5.2e-07 58.5 53 50.9
CARHR248300 Cardamine hirsuta HOM05D002702 ORTHO05D003416 6.8e-07 58.2 130 30.8
PRCOL_00005646 Prasinoderma coloniale HOM05D002702 ORTHO05D003416 8.9e-07 57.8 96 37.5
BcaB02g08778 Brassica carinata HOM05D002702 ORTHO05D003416 1.5e-06 57.0 130 33.1
C03p43620 Brassica napus HOM05D002702 ORTHO05D003416 1.5e-06 57.0 94 35.1
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 1.5e-06 57.0 82 42.7
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 1.5e-06 57.0 137 34.3
BcaC01g04231 Brassica carinata HOM05D002702 ORTHO05D003416 2.0e-06 56.6 94 35.1
BolC3t16631H Brassica oleracea HOM05D002702 ORTHO05D003416 2.0e-06 56.6 94 35.1
Medtr6g027510 Medicago truncatula HOM05D002702 ORTHO05D003416 2.0e-06 56.6 110 38.2
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 2.0e-06 56.6 49 53.1
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 3.4e-06 55.8 82 42.7
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 3.4e-06 55.8 103 41.7
vmacro18115 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 5.8e-06 55.1 68 44.1
FAN01G1797 Fragaria x ananassa HOM05D002702 ORTHO05D003416 9.9e-06 54.3 101 34.7


User provided reference genes

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