Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06769 Sequoiadendron giganteum HOM05D002535 ORTHO05D006846 3.6e-149 531.6 272 100.0
ATR0579G153 Amborella trichopoda HOM05D002535 ORTHO05D006846 2.5e-49 199.9 204 49.0
Haze_00328 Corylus avellana HOM05D002535 ORTHO05D006846 2.1e-48 196.8 201 49.8
Cfa016132 Carpinus fangiana HOM05D002535 ORTHO05D006846 3.6e-48 196.1 199 49.7
Dinv17281 Davidia involucrata HOM05D002535 ORTHO05D006846 6.2e-48 195.3 201 50.2
PSO782G3476 Papaver somniferum HOM05D002535 ORTHO05D006846 6.8e-47 191.8 196 50.5
Sopen03g021730 Solanum pennellii HOM05D002535 ORTHO05D006846 8.9e-47 191.4 187 52.4
CiPaw.05G208400 Carya illinoinensis HOM05D002535 ORTHO05D006846 1.5e-46 190.7 217 46.5
PSO063G0674 Papaver somniferum HOM05D002535 ORTHO05D006846 5.8e-46 188.7 196 49.5
CANSAT21G0133 Cannabis sativa HOM05D002535 ORTHO05D006846 7.5e-46 188.3 194 48.5
Solyc03g080010.3 Solanum lycopersicum HOM05D002535 ORTHO05D006846 7.5e-46 188.3 187 51.3
CSS0030602 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D006846 9.8e-46 188.0 242 44.6
CSS0041054 Camellia sinensis var. sinensis HOM05D002535 ORTHO05D006846 9.8e-46 188.0 242 44.6
Actinidia08716 Actinidia chinensis HOM05D002535 ORTHO05D006846 2.2e-45 186.8 189 50.3
Nn1g09652 Nelumbo nucifera HOM05D002535 ORTHO05D006846 2.2e-45 186.8 191 47.6
TAR375G1062 Trochodendron aralioides HOM05D002535 ORTHO05D006846 2.2e-45 186.8 189 49.7
Peaxi162Scf01026g00257 Petunia axillaris HOM05D002535 ORTHO05D006846 8.3e-45 184.9 191 49.7
vmacro06471 Vaccinium macrocarpon HOM05D002535 ORTHO05D006846 3.2e-44 183.0 187 49.2
FAN03G0390 Fragaria x ananassa HOM05D002535 ORTHO05D006846 4.1e-44 182.6 200 47.0
FvH4_7g33260 Fragaria vesca HOM05D002535 ORTHO05D006846 7.1e-44 181.8 200 46.5
Nitab4.5_0000021g0180 Nicotiana tabacum HOM05D002535 ORTHO05D006846 7.1e-44 181.8 191 49.2
QL09p006081 Quercus lobata HOM05D002535 ORTHO05D006846 9.2e-44 181.4 188 48.4
Cc01_g06440 Coffea canephora HOM05D002535 ORTHO05D006846 1.6e-43 180.6 184 50.5
Rhsim03G0218100 Rhododendron simsii HOM05D002535 ORTHO05D006846 1.6e-43 180.6 206 44.7
MD07G1302400 Malus domestica HOM05D002535 ORTHO05D006846 2.7e-43 179.9 205 45.9
RcHm_v2.0_Chr1g0383251 Rosa chinensis HOM05D002535 ORTHO05D006846 6.0e-43 178.7 197 46.7
CAN.G303.52 Capsicum annuum HOM05D002535 ORTHO05D006846 1.0e-42 177.9 191 48.2
Sed0019266 Sechium edule HOM05D002535 ORTHO05D006846 1.0e-42 177.9 207 45.4
Migut.F00161 Erythranthe guttata HOM05D002535 ORTHO05D006846 1.7e-42 177.2 187 46.0
FAN10G2813 Fragaria x ananassa HOM05D002535 ORTHO05D006846 1.7e-42 177.2 200 46.0
Manes.18G108000 Manihot esculenta HOM05D002535 ORTHO05D006846 1.7e-42 177.2 186 47.3
PGR142G0839 Punica granatum HOM05D002535 ORTHO05D006846 2.3e-42 176.8 190 46.8
TWI39G1073 Tripterygium wilfordii HOM05D002535 ORTHO05D006846 3.9e-42 176.0 187 47.6
CsaV3_4G009720 Cucumis sativus L. HOM05D002535 ORTHO05D006846 8.6e-42 174.9 189 48.1
Oeu055378.1 Olea europaea HOM05D002535 ORTHO05D006846 1.9e-41 173.7 184 46.7
MELO3C024845.2 Cucumis melo HOM05D002535 ORTHO05D006846 4.3e-41 172.6 189 47.6
Lsat_1_v5_gn_2_5220 Lactuca sativa HOM05D002535 ORTHO05D006846 2.1e-40 170.2 197 46.7
Lj1C1030G8 Lonicera japonica HOM05D002535 ORTHO05D006846 2.1e-40 170.2 182 47.3
Prupe.2G321600 Prunus persica HOM05D002535 ORTHO05D006846 2.8e-40 169.9 182 48.9
Aqoxy5G04389 Aquilegia oxysepala HOM05D002535 ORTHO05D006846 3.6e-40 169.5 196 43.4
FAN10G1460 Fragaria x ananassa HOM05D002535 ORTHO05D006846 3.6e-40 169.5 199 45.2
GSVIVG01038675001 Vitis vinifera HOM05D002535 ORTHO05D006846 6.2e-40 168.7 190 45.3
COL.COLO4_14395 Corchorus olitorius HOM05D002535 ORTHO05D006846 1.8e-39 167.2 189 45.0
SGA_v2.0_scaffold44G16838 Striga asiatica HOM05D002535 ORTHO05D006846 2.3e-39 166.8 184 45.1
Thecc.03G211600 Theobroma cacao HOM05D002535 ORTHO05D006846 2.3e-39 166.8 189 45.0
HanXRQChr14g0452381 Helianthus annuus HOM05D002535 ORTHO05D006846 3.1e-39 166.4 181 45.9
Nitab4.5_0004582g0020 Nicotiana tabacum HOM05D002535 ORTHO05D006846 3.1e-39 166.4 185 46.5
Gorai.008G263400 Gossypium raimondii HOM05D002535 ORTHO05D006846 6.8e-39 165.2 190 43.7
MBI04_g09825_MAGBIO Magnolia biondii HOM05D002535 ORTHO05D006846 1.2e-38 164.5 161 48.4
EL10Ac3g05139 Beta vulgaris HOM05D002535 ORTHO05D006846 2.0e-38 163.7 184 45.7
Gohir.A12G245000 Gossypium hirsutum HOM05D002535 ORTHO05D006846 3.4e-38 162.9 190 43.2
Cpa.g.sc3.180 Carica papaya HOM05D002535 ORTHO05D006846 7.6e-38 161.8 187 44.9
Potri.012G005000 Populus trichocarpa HOM05D002535 ORTHO05D006846 2.2e-37 160.2 228 40.4
Atru.chr12.2507 Acer truncatum HOM05D002535 ORTHO05D006846 4.9e-37 159.1 198 40.4
Sc19g0000400 Simmondsia chinensis HOM05D002535 ORTHO05D006846 4.9e-37 159.1 190 43.2
Atru.chr12.2530 Acer truncatum HOM05D002535 ORTHO05D006846 6.4e-37 158.7 198 40.4
Duzib084G0662 Durio zibethinus HOM05D002535 ORTHO05D006846 6.4e-37 158.7 189 43.4
Hma1.2p1_0115F.1_g055690 Hydrangea macrophylla HOM05D002535 ORTHO05D006846 6.4e-37 158.7 185 45.9
unitig_748.g7357 Utricularia gibba HOM05D002535 ORTHO05D006846 6.4e-37 158.7 188 43.1
arahy.Tifrunner.gnm1.ann1.DLGH4W Arachis hypogaea HOM05D002535 ORTHO05D006846 1.1e-36 157.9 194 43.8
arahy.Tifrunner.gnm1.ann1.HMHY7M Arachis hypogaea HOM05D002535 ORTHO05D006846 1.1e-36 157.9 220 40.5
Sabra12G0007000 Salix brachista HOM05D002535 ORTHO05D006846 1.4e-36 157.5 183 43.7
Sabra12G0000700 Salix brachista HOM05D002535 ORTHO05D006846 3.2e-36 156.4 183 43.2
Ciclev10018840m.g Citrus clementina HOM05D002535 ORTHO05D006846 4.1e-36 156.0 194 42.8
DCAR_010560 Daucus carota HOM05D002535 ORTHO05D006846 5.4e-36 155.6 236 38.1
Psat7g096080 Pisum sativum HOM05D002535 ORTHO05D006846 5.4e-36 155.6 204 40.7
SalBow6G2866 Salvia bowleyana HOM05D002535 ORTHO05D006846 1.2e-35 154.5 246 36.2
THA.LOC104825164 Tarenaya hassleriana HOM05D002535 ORTHO05D006846 1.2e-35 154.5 203 39.4
Aa31LG3G9940 Aethionema arabicum HOM05D002535 ORTHO05D006846 1.6e-35 154.1 187 42.2
Ah.13g071000 Amaranthus hybridus HOM05D002535 ORTHO05D006846 2.7e-35 153.3 191 41.4
Medtr5g068600 Medicago truncatula HOM05D002535 ORTHO05D006846 3.5e-35 152.9 231 38.1
Glyma.02G221300 Glycine max HOM05D002535 ORTHO05D006846 4.6e-35 152.5 194 41.2
Ca_05547_v3 Cicer arietinum L. HOM05D002535 ORTHO05D006846 7.8e-35 151.8 191 40.8
AUR62005953 Chenopodium quinoa HOM05D002535 ORTHO05D006846 1.0e-34 151.4 273 35.9
Zm00001eb220610 Zea mays HOM05D002535 ORTHO05D006846 2.3e-34 150.2 187 45.5
LjContig00155g0000379 Lotus japonicus HOM05D002535 ORTHO05D006846 3.0e-34 149.8 194 41.8
Phvul.008G188400 Phaseolus vulgaris HOM05D002535 ORTHO05D006846 3.0e-34 149.8 186 41.9
Carub.0008s1437 Capsella rubella HOM05D002535 ORTHO05D006846 4.3e-33 146.0 187 39.0
HPP92_007410 Vanilla planifolia HOM05D002535 ORTHO05D006846 7.3e-33 145.2 201 38.8
AT5G54090 Arabidopsis thaliana HOM05D002535 ORTHO05D006846 9.6e-33 144.8 187 39.6
AL8G29210 Arabidopsis lyrata HOM05D002535 ORTHO05D006846 1.6e-32 144.1 187 40.1
BcaB05g22108 Brassica carinata HOM05D002535 ORTHO05D006846 2.8e-32 143.3 182 40.7
TPR.G5823 Trifolium pratense HOM05D002535 ORTHO05D006846 6.2e-32 142.1 182 40.1
BraA02t06123Z Brassica rapa HOM05D002535 ORTHO05D006846 8.1e-32 141.7 182 39.6
BcaC03g14353 Brassica carinata HOM05D002535 ORTHO05D006846 1.1e-31 141.4 182 39.6
A02p10580 Brassica napus HOM05D002535 ORTHO05D006846 1.1e-31 141.4 182 39.6
C02p17660 Brassica napus HOM05D002535 ORTHO05D006846 2.4e-31 140.2 182 39.0
BolC2t07896H Brassica oleracea HOM05D002535 ORTHO05D006846 3.1e-31 139.8 182 39.0
Thhalv10012724m.g Eutrema salsugineum HOM05D002535 ORTHO05D006846 3.1e-31 139.8 182 39.6
Sp6g16120 Schrenkiella parvula HOM05D002535 ORTHO05D006846 3.1e-31 139.8 182 39.6
Hund21077 Selenicereus undatus HOM05D002535 ORTHO05D006846 8.9e-31 138.3 299 30.8
AagrBONN_evm.TU.Sc2ySwM_344.1529 Anthoceros agrestis HOM05D002535 ORTHO05D006846 1.2e-30 137.9 193 37.8
ECA238G0251 Erigeron canadensis HOM05D002676 ORTHO05D006846 7.6e-30 135.2 187 38.5
Eucgr.K00458 Eucalyptus grandis HOM05D002535 ORTHO05D006846 1.7e-29 134.0 147 44.9
VMungo0647G2508 Vigna mungo HOM05D002535 ORTHO05D006846 4.9e-29 132.5 156 44.9
Pp3c5_20780 Physcomitrium patens HOM05D002535 ORTHO05D006846 6.4e-29 132.1 183 40.4
Mapoly0023s0121 Marchantia polymorpha HOM05D002535 ORTHO05D006846 1.9e-28 130.6 193 40.4
ClCG07G009710 Citrullus lanatus HOM05D002535 ORTHO05D006846 2.4e-28 130.2 204 37.7
FAN01G2729 Fragaria x ananassa HOM05D002535 ORTHO05D006846 1.6e-27 127.5 191 37.7
Psat0s1274g0040 Pisum sativum HOM05D002535 ORTHO05D006846 7.3e-25 118.6 163 39.9
Gohir.D12G245800 Gossypium hirsutum HOM05D002535 ORTHO05D006846 2.4e-23 113.6 115 44.3
Lalb_Chr10g0103011 Lupinus albus HOM05D002535 ORTHO05D006846 1.2e-22 111.3 130 41.5
AUR62028111 Chenopodium quinoa HOM05D002535 ORTHO05D006846 4.2e-20 102.8 142 38.0
SMO239G0005 Selaginella moellendorffii HOM05D002535 ORTHO05D006846 4.2e-20 102.8 184 32.6
CDE02G3584 Ceratophyllum demersum HOM05D002535 ORTHO05D006846 7.1e-20 102.1 111 48.6
CBR_g37825 Chara braunii HOM05D002535 ORTHO05D006846 9.3e-20 101.7 199 34.2
Glyma.14G188950 Glycine max HOM05D002535 ORTHO05D006846 3.0e-18 96.7 183 33.9
MCO04G146 Micromonas commoda HOM05D002535 ORTHO05D006846 5.8e-14 82.4 177 31.1
Cre01.g040350 Chlamydomonas reinhardtii HOM05D002535 ORTHO05D006846 2.1e-11 73.9 178 27.5
Prupe.4G045200 Prunus persica HOM05D002535 ORTHO05D008858 1.8e-10 70.9 259 26.3
Lj2C287G7 Lonicera japonica HOM05D002535 ORTHO05D008858 3.3e-09 66.6 215 25.1
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 1.3e-08 64.7 64 45.3
Haze_05874 Corylus avellana HOM05D002535 ORTHO05D021471 1.6e-08 64.3 64 45.3
Peaxi162Scf00947g00117 Petunia axillaris HOM05D002535 ORTHO05D008858 1.6e-08 64.3 208 26.0
arahy.Tifrunner.gnm1.ann1.RSL1D2 Arachis hypogaea HOM05D002535 ORTHO05D021471 2.8e-08 63.5 77 40.3
CiPaw.10G047500 Carya illinoinensis HOM05D002535 ORTHO05D008858 3.7e-08 63.2 198 25.8
Cre01.g014800 Chlamydomonas reinhardtii HOM05D002535 ORTHO05D008858 4.0e-07 59.7 178 25.8
AL2G19710 Arabidopsis lyrata HOM05D002535 ORTHO05D008858 5.3e-07 59.3 185 25.9
AT1G65070 Arabidopsis thaliana HOM05D002535 ORTHO05D008858 5.3e-07 59.3 186 26.9
CARHR053870 Cardamine hirsuta HOM05D002535 ORTHO05D008858 5.3e-07 59.3 185 25.4
Haze_18353 Corylus avellana HOM05D002535 ORTHO05D021471 6.9e-07 58.9 55 49.1
SGA_v2.0_scaffold100G29671 Striga asiatica HOM05D002535 ORTHO05D008858 1.2e-06 58.2 208 21.2
Nitab4.5_0019564g0010 Nicotiana tabacum HOM05D002535 ORTHO05D008858 1.5e-06 57.8 224 25.9
Carub.0002s1037 Capsella rubella HOM05D002535 ORTHO05D008858 3.4e-06 56.6 181 26.5
BcaB05g24079 Brassica carinata HOM05D002535 ORTHO05D008858 4.5e-06 56.2 188 24.5
FAN16G0286 Fragaria x ananassa HOM05D002535 ORTHO05D008858 4.5e-06 56.2 200 26.5
arahy.Tifrunner.gnm1.ann1.404A7L Arachis hypogaea HOM05D016021 ORTHO05D021471 5.8e-06 55.8 64 43.8
Sp5g19600 Schrenkiella parvula HOM05D002535 ORTHO05D008858 5.8e-06 55.8 185 25.4
Thhalv10022461m.g Eutrema salsugineum HOM05D002535 ORTHO05D008858 7.6e-06 55.5 185 24.9
Solyc02g078390.3 Solanum lycopersicum HOM05D002535 ORTHO05D008858 1.0e-05 55.1 174 27.0
Sopen02g023250 Solanum pennellii HOM05D002535 ORTHO05D008858 1.0e-05 55.1 174 26.4


User provided reference genes

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