Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.2e-56 221.5 108 100.0
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 6.3e-12 74.3 76 47.4
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 2.9e-09 65.5 42 71.4
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 5.0e-09 64.7 42 69.0
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 1.5e-08 63.2 56 53.6
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 2.5e-08 62.4 56 51.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 4.2e-08 61.6 42 64.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 4.2e-08 61.6 42 66.7
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 4.2e-08 61.6 75 40.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 5.5e-08 61.2 56 48.2
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 5.5e-08 61.2 60 48.3
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 5.5e-08 61.2 75 40.0
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 5.5e-08 61.2 56 50.0
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 7.2e-08 60.8 58 48.3
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 7.2e-08 60.8 58 48.3
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 7.2e-08 60.8 50 54.0
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 7.2e-08 60.8 88 39.8
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 9.4e-08 60.5 56 48.2
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 9.4e-08 60.5 58 46.6
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 9.4e-08 60.5 58 46.6
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 9.4e-08 60.5 57 52.6
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 9.4e-08 60.5 58 46.6
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.2e-07 60.1 42 59.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.2e-07 60.1 58 44.8
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 1.2e-07 60.1 43 60.5
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 1.6e-07 59.7 42 61.9
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 1.6e-07 59.7 42 61.9
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 2.1e-07 59.3 43 60.5
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 2.1e-07 59.3 58 44.8
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 2.1e-07 59.3 56 48.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 2.1e-07 59.3 56 48.2
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 2.1e-07 59.3 44 59.1
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.1e-07 59.3 59 40.7
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 2.1e-07 59.3 45 57.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 2.7e-07 58.9 42 54.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 3.6e-07 58.5 56 46.4
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 3.6e-07 58.5 56 46.4
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 3.6e-07 58.5 56 46.4
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 3.6e-07 58.5 56 46.4
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 3.6e-07 58.5 56 46.4
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.6e-07 58.5 44 54.5
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 3.6e-07 58.5 48 54.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 3.6e-07 58.5 56 46.4
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 3.6e-07 58.5 56 51.8
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 4.7e-07 58.2 56 48.2
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 4.7e-07 58.2 58 48.3
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 4.7e-07 58.2 45 48.9
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.7e-07 58.2 43 60.5
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 4.7e-07 58.2 45 55.6
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 6.1e-07 57.8 56 46.4
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 6.1e-07 57.8 56 46.4
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 6.1e-07 57.8 58 46.6
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 6.1e-07 57.8 42 61.9
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 8.0e-07 57.4 56 48.2
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 8.0e-07 57.4 58 44.8
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 8.0e-07 57.4 58 43.1
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 8.0e-07 57.4 42 57.1
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.0e-06 57.0 56 44.6
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 1.0e-06 57.0 56 46.4
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 1.0e-06 57.0 42 59.5
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.0e-06 57.0 58 44.8
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.0e-06 57.0 58 44.8
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 1.0e-06 57.0 56 48.2
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 1.0e-06 57.0 58 44.8
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 1.0e-06 57.0 42 59.5
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 1.0e-06 57.0 45 53.3
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 1.4e-06 56.6 56 44.6
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 1.4e-06 56.6 42 57.1
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.8e-06 56.2 56 46.4
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.8e-06 56.2 43 58.1
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 2.3e-06 55.8 42 52.4
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 2.3e-06 55.8 58 41.4
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 3.0e-06 55.5 42 54.8
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 3.0e-06 55.5 42 54.8
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 3.0e-06 55.5 42 54.8
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.0e-06 55.5 56 48.2
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 3.0e-06 55.5 44 50.0
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 3.0e-06 55.5 42 57.1
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 4.0e-06 55.1 42 52.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 4.0e-06 55.1 42 52.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 4.0e-06 55.1 56 44.6
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 4.0e-06 55.1 42 52.4
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 4.0e-06 55.1 42 54.8
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 5.2e-06 54.7 56 44.6
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 5.2e-06 54.7 58 44.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 5.2e-06 54.7 58 41.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 5.2e-06 54.7 57 42.1
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 6.7e-06 54.3 42 52.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.7e-06 54.3 56 44.6
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 6.7e-06 54.3 56 44.6
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 6.7e-06 54.3 42 54.8
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 6.7e-06 54.3 42 47.6
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 6.7e-06 54.3 44 47.7


User provided reference genes

Program Settings