Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.5e-248 860.9 464 100.0
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 5.0e-90 335.9 485 47.4
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 7.7e-75 285.4 476 46.2
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.9e-73 280.8 459 44.0
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 5.5e-73 279.3 496 40.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.2e-72 278.1 451 45.2
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 6.1e-72 275.8 482 43.2
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 8.0e-72 275.4 457 42.9
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 4.0e-71 273.1 457 43.1
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.2e-70 271.6 493 40.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.4e-70 270.0 462 42.2
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 5.7e-70 269.2 459 42.3
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.3e-69 268.1 480 42.3
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 8.3e-69 265.4 490 40.4
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 1.4e-68 264.6 469 40.7
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 5.4e-68 262.7 453 40.4
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.2e-67 261.5 454 41.6
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.2e-67 261.5 454 41.6
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.7e-67 260.4 475 42.5
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 4.5e-67 259.6 453 40.8
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.3e-66 258.1 461 42.5
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.5e-65 254.6 457 41.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.9e-65 254.2 465 40.6
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.5e-65 253.8 484 39.0
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 3.3e-65 253.4 453 40.0
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.3e-65 253.1 458 42.1
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.2e-64 251.5 480 39.6
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 2.1e-64 250.8 454 42.3
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.1e-64 250.8 458 41.5
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.1e-64 250.8 469 41.6
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.1e-64 250.8 473 41.2
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 2.1e-64 250.8 473 39.1
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 4.7e-64 249.6 457 38.3
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 4.7e-64 249.6 472 40.5
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.7e-64 249.6 464 41.6
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.0e-63 248.4 471 40.1
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.0e-63 248.4 487 40.5
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.4e-63 248.1 455 39.3
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 4.0e-63 246.5 516 38.4
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 8.9e-63 245.4 484 39.0
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 8.9e-63 245.4 253 55.3
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 2.0e-62 244.2 517 37.7
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.0e-62 244.2 456 42.8
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.6e-62 243.8 464 42.2
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 3.4e-62 243.4 491 37.1
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.4e-62 243.4 474 38.8
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 5.7e-62 242.7 465 41.9
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 7.5e-62 242.3 457 41.1
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.3e-61 241.5 491 36.9
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.7e-61 241.1 463 41.3
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.9e-61 240.4 521 38.2
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 3.7e-61 240.0 467 41.3
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 3.7e-61 240.0 484 38.6
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.1e-60 238.4 479 36.5
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.1e-60 238.4 483 39.8
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 1.4e-60 238.0 468 42.1
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.8e-60 237.7 522 38.5
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 3.2e-60 236.9 485 39.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 3.2e-60 236.9 512 37.7
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.6e-59 234.6 463 41.0
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.7e-59 233.8 461 40.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 3.5e-59 233.4 465 39.6
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.6e-59 233.0 456 40.6
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 7.8e-59 232.3 469 39.9
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 7.8e-59 232.3 487 40.0
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.3e-58 231.5 496 36.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.7e-58 231.1 457 39.6
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.3e-58 230.7 495 36.4
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.3e-58 230.7 460 39.6
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.0e-58 230.3 530 37.5
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 3.9e-58 229.9 482 38.8
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 5.0e-58 229.6 490 39.8
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 6.6e-58 229.2 474 37.6
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 6.6e-58 229.2 476 36.6
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 8.6e-58 228.8 482 37.3
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.1e-57 228.4 253 52.2
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.5e-57 228.0 497 36.4
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.5e-57 228.0 486 36.8
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.9e-57 227.6 487 38.2
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.9e-57 227.6 461 39.5
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.5e-57 227.3 483 39.3
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 4.3e-57 226.5 483 38.9
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 5.6e-57 226.1 551 35.0
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 7.3e-57 225.7 491 36.7
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 9.5e-57 225.3 484 37.6
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.5e-57 225.3 440 39.8
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 9.5e-57 225.3 479 37.6
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 9.5e-57 225.3 479 36.7
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.2e-56 224.9 464 37.1
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.2e-56 224.9 498 38.8
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.6e-56 224.6 451 37.0
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 2.1e-56 224.2 478 39.1
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 2.1e-56 224.2 490 37.3
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 2.8e-56 223.8 491 36.5
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 4.7e-56 223.0 468 36.1
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 4.7e-56 223.0 509 35.6
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 4.7e-56 223.0 483 37.5
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.2e-56 222.6 459 36.8
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 8.0e-56 222.2 464 38.4
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.0e-55 221.9 506 35.6
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.4e-55 221.5 521 35.9
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.2e-54 218.4 481 36.6
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.6e-54 217.2 463 37.8
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.4e-54 216.5 469 37.1
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 5.8e-54 216.1 473 35.1
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.8e-54 216.1 482 36.9
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 7.5e-54 215.7 483 35.6
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 7.5e-54 215.7 519 36.6
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 9.8e-54 215.3 492 38.0
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.3e-53 214.9 484 35.5
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-53 214.9 473 34.9
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.9e-53 213.8 503 37.6
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.9e-53 213.8 484 34.5
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.7e-53 213.4 511 34.1
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 3.7e-53 213.4 478 34.9
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 3.7e-53 213.4 391 40.2
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 3.7e-53 213.4 516 36.0
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.1e-52 211.8 453 37.1
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.1e-52 211.8 472 38.8
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.4e-52 211.5 487 36.1
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 3.2e-52 210.3 473 35.7
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 4.1e-52 209.9 488 35.9
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 7.0e-52 209.1 463 36.1
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.2e-51 208.4 472 38.8
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.0e-51 207.6 489 34.6
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-51 207.6 489 34.6
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.0e-51 207.6 489 34.6
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.5e-51 206.8 468 35.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 4.6e-51 206.5 467 36.4
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.0e-50 205.3 466 36.5
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.0e-50 205.3 452 38.5
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 4.3e-49 199.9 477 34.6
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 2.1e-48 197.6 481 35.1
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.4e-47 194.9 477 33.3
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 3.1e-47 193.7 471 34.4
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 8.9e-47 192.2 486 34.0
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.5e-46 191.4 460 32.8
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 3.4e-46 190.3 462 33.3
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 5.8e-46 189.5 503 34.6
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 7.5e-46 189.1 461 34.3
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 7.5e-46 189.1 461 34.5
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.9e-44 184.5 481 36.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 3.0e-42 177.2 164 53.7
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.5e-41 174.9 484 36.8
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.1e-40 171.0 450 34.7
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 2.8e-40 170.6 160 53.1
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 6.2e-40 169.5 255 42.4
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 6.2e-40 169.5 255 42.4
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 1.4e-39 168.3 453 33.6
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.8e-39 167.9 255 42.0
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.8e-39 166.0 354 38.4
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.4e-36 158.3 461 33.0
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 3.2e-36 157.1 460 32.0
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 6.6e-34 149.4 438 32.9
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.8e-31 141.4 176 47.2
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 3.5e-27 127.1 362 32.6
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.6e-27 126.7 78 73.1
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 1.8e-23 114.8 493 27.6
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-22 112.1 101 54.5
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.3e-21 108.6 372 31.5
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.3e-18 97.8 217 35.5
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 1.4e-15 88.6 229 32.8
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 6.9e-15 86.3 90 51.1
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-13 82.0 86 52.3
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 7.1e-12 76.3 164 33.5
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 3.0e-10 70.9 87 43.7
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.1e-09 68.9 66 50.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 4.3e-09 67.0 143 37.1
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 5.6e-09 66.6 152 32.9
Cfa023887 Carpinus fangiana HOM05D002258 ORTHO05D002539 1.4e-07 62.0 128 35.2
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 4.0e-07 60.5 94 39.4
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 4.0e-07 60.5 120 36.7
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 5.3e-07 60.1 140 35.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 5.3e-07 60.1 140 35.0
CBR_g34252 Chara braunii HOM05D002258 ORTHO05D002539 2.0e-06 58.2 123 31.7


User provided reference genes

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