Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1675.6 841 100.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1337.8 837 77.1
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1327.0 837 76.5
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1327.0 834 76.3
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1296.2 835 74.1
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1285.0 838 74.3
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1280.0 841 73.2
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1280.0 840 73.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1273.5 837 72.9
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1271.9 840 72.6
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1271.5 829 73.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1270.4 839 72.9
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1270.4 839 73.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1269.2 836 72.8
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1267.7 834 73.5
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1266.9 839 72.7
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1265.8 836 72.5
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1263.4 843 72.8
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1263.1 834 73.0
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1261.9 843 72.1
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1260.7 843 72.1
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1259.2 839 72.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1259.2 839 72.9
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1256.9 834 72.7
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1256.9 919 68.0
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1255.7 848 71.8
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1255.7 900 68.1
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1253.0 848 71.7
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1252.7 839 72.1
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1251.9 848 71.9
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1251.5 853 71.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1250.3 836 71.3
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1250.3 842 72.7
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1250.0 839 72.9
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1249.2 839 72.5
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1248.8 837 72.0
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1247.6 839 72.0
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1247.3 836 72.2
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1247.3 836 72.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1246.9 839 72.6
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1244.6 837 72.8
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1244.2 836 72.7
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1244.2 839 71.4
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1243.4 839 71.9
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 848 71.5
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1241.5 839 72.1
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1241.1 839 71.5
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1240.7 846 71.0
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1239.9 853 70.0
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1239.6 841 72.1
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1239.2 859 70.0
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1238.8 856 70.9
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1238.0 837 71.8
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1237.6 839 71.3
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1235.3 838 70.8
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1233.8 841 70.7
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1231.5 858 70.5
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1229.5 852 70.7
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1225.3 839 70.8
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1224.2 843 72.0
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1223.4 844 71.2
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1223.4 891 67.6
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1223.0 853 69.4
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1220.7 839 70.4
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1219.5 941 64.9
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1218.4 837 70.7
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1217.2 853 69.2
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1215.7 853 69.2
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1214.9 839 71.2
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1208.0 867 69.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1207.6 904 67.5
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1205.3 844 69.7
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1195.3 852 68.7
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1193.3 912 64.8
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1186.4 912 64.4
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1181.8 852 68.5
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1179.1 852 68.5
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1179.1 852 68.5
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1179.1 852 68.5
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1179.1 840 68.1
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1178.7 852 68.5
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1177.2 852 68.3
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1177.2 852 68.3
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1174.1 836 68.7
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1171.0 782 71.6
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1169.5 852 67.5
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1166.8 851 67.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1166.0 852 67.6
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1164.8 852 67.0
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1130.5 759 72.6
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 0.0e+00 1102.0 840 63.9
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1091.6 723 72.9
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 1.0e-303 1046.6 839 62.9
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 4.5e-299 1031.2 879 60.6
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 7.7e-299 1030.4 836 63.0
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.8e-277 958.7 845 59.8
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.2e-276 953.7 847 61.5
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.3e-266 923.3 619 71.6
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 2.0e-262 909.4 1135 47.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.4e-254 882.1 686 65.9
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 7.8e-251 870.9 795 57.5
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 9.6e-241 837.4 724 60.4
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 4.2e-220 768.8 600 62.2
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 3.6e-203 712.6 675 56.3
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.2e-195 687.6 470 69.4
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.7e-195 686.4 599 60.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 2.0e-193 680.2 862 44.7
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.1e-180 637.9 430 73.7
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.8e-178 630.6 403 72.5
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 3.1e-175 619.8 468 67.1
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 5.2e-170 602.4 852 40.0
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 3.7e-152 543.1 353 70.8
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.0e-149 533.5 363 73.0
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.2e-145 521.5 341 75.4
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.3e-141 508.1 825 36.4
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.6e-131 473.4 327 65.4
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 3.4e-129 466.8 1014 31.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.5e-110 403.7 258 74.8
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 4.6e-110 403.3 428 50.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.2e-105 388.7 331 60.4
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 4.2e-103 380.2 593 41.0
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 6.2e-99 366.3 367 55.0
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.1e-82 310.5 319 54.2
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.2e-75 288.1 218 63.8
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 8.2e-75 286.2 236 59.7
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 4.1e-66 257.3 165 74.5
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-65 255.4 154 74.7
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.9e-40 171.4 97 79.4
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 6.1e-38 163.7 108 70.4
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.7e-32 145.6 119 58.0
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-30 139.0 101 66.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 4.7e-30 137.5 85 74.1
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 2.9e-27 128.3 87 67.8
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-26 125.9 107 59.8
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-26 125.6 94 63.8
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 9.2e-26 123.2 98 61.2
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 3.9e-24 117.9 121 52.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 5.1e-24 117.5 91 60.4
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 5.1e-24 117.5 113 54.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.5e-23 115.9 75 69.3
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.9e-23 115.5 101 59.4
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 5.6e-23 114.0 91 59.3
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 5.6e-23 114.0 67 77.6
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 7.3e-23 113.6 100 60.0
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 9.5e-23 113.2 108 55.6
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.1e-21 109.8 185 41.6
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-20 106.3 96 56.2
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-18 99.4 120 51.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-16 91.3 70 61.4
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 5.1e-16 90.9 52 78.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-15 89.4 52 76.9
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 6.2e-14 84.0 52 78.8
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 8.1e-14 83.6 68 58.8
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.1e-13 83.2 67 56.7
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-12 77.4 61 59.0
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 2.9e-11 75.1 50 70.0
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 6.4e-11 73.9 115 39.1
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.0e-08 66.6 61 59.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.3e-08 65.5 37 78.4
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 5.1e-08 64.3 94 43.6
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 3.3e-07 61.6 84 44.0
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 3.3e-07 61.6 84 44.0
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.8e-06 58.5 33 81.8
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 6.2e-06 57.4 41 63.4


User provided reference genes

Program Settings