Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01209 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 5.3e-60 234.2 121 100.0
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 4.0e-47 191.4 103 94.2
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 3.6e-40 168.3 103 77.7
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 1.8e-39 166.0 103 76.7
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.3e-39 165.6 103 75.7
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.3e-39 165.6 103 75.7
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 2.3e-39 165.6 103 75.7
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 3.0e-39 165.2 105 72.4
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 4.0e-39 164.9 103 75.7
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 5.2e-39 164.5 103 74.8
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 5.2e-39 164.5 103 77.7
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 6.8e-39 164.1 103 76.7
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.5e-38 162.9 105 71.4
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.5e-38 162.9 105 71.4
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 1.5e-38 162.9 102 74.5
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 1.5e-38 162.9 103 74.8
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 2.0e-38 162.5 103 76.7
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 2.0e-38 162.5 103 75.7
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 3.4e-38 161.8 103 75.7
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 3.4e-38 161.8 102 73.5
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 3.4e-38 161.8 102 73.5
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 3.4e-38 161.8 102 73.5
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.4e-38 161.4 105 74.3
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 4.4e-38 161.4 103 72.8
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 5.7e-38 161.0 103 74.8
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 7.5e-38 160.6 103 74.8
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 9.8e-38 160.2 102 72.5
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 9.8e-38 160.2 103 73.8
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 9.8e-38 160.2 103 74.8
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.3e-37 159.8 103 73.8
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 1.7e-37 159.5 103 74.8
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.7e-37 159.5 103 73.8
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.7e-37 159.5 103 73.8
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 2.2e-37 159.1 103 72.8
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 2.8e-37 158.7 103 73.8
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 3.7e-37 158.3 103 73.8
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 3.7e-37 158.3 103 74.8
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 3.7e-37 158.3 103 70.9
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 3.7e-37 158.3 103 74.8
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 3.7e-37 158.3 103 69.9
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 4.9e-37 157.9 103 73.8
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 6.3e-37 157.5 103 73.8
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 6.3e-37 157.5 103 72.8
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 6.3e-37 157.5 103 73.8
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 6.3e-37 157.5 103 72.8
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 6.3e-37 157.5 103 72.8
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 8.3e-37 157.1 103 70.9
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 8.3e-37 157.1 102 71.6
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 8.3e-37 157.1 103 73.8
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 8.3e-37 157.1 103 73.8
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.1e-36 156.8 103 72.8
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.1e-36 156.8 103 71.8
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.4e-36 156.4 103 72.8
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.4e-36 156.4 103 73.8
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 1.4e-36 156.4 103 72.8
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.4e-36 156.4 103 72.8
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.8e-36 156.0 103 71.8
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.8e-36 156.0 103 73.8
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 1.8e-36 156.0 103 70.9
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 1.8e-36 156.0 103 71.8
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 1.8e-36 156.0 103 73.8
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 1.8e-36 156.0 103 71.8
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 2.4e-36 155.6 103 68.9
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 2.4e-36 155.6 103 72.8
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 2.4e-36 155.6 103 69.9
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 3.1e-36 155.2 103 73.8
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 3.1e-36 155.2 103 71.8
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 3.1e-36 155.2 103 71.8
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 3.1e-36 155.2 103 71.8
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 71.8
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 71.8
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 71.8
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 72.8
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 71.8
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 71.8
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 72.8
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 4.1e-36 154.8 103 72.8
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 5.4e-36 154.5 103 71.8
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 5.4e-36 154.5 103 70.9
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 7.0e-36 154.1 103 72.8
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 7.0e-36 154.1 103 71.8
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 9.2e-36 153.7 103 70.9
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 9.2e-36 153.7 103 70.9
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 9.2e-36 153.7 103 68.9
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 9.2e-36 153.7 103 70.9
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 9.2e-36 153.7 103 71.8
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 9.2e-36 153.7 103 70.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.2e-35 153.3 103 69.9
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 1.2e-35 153.3 103 71.8
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 1.6e-35 152.9 102 71.6
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 1.6e-35 152.9 103 70.9
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 2.0e-35 152.5 103 71.8
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 2.7e-35 152.1 103 71.8
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 3.5e-35 151.8 103 71.8
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 3.5e-35 151.8 103 70.9
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 3.5e-35 151.8 105 66.7
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 4.5e-35 151.4 103 69.9
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 4.5e-35 151.4 103 69.9
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 4.5e-35 151.4 103 69.9
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 4.5e-35 151.4 103 69.9
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 5.9e-35 151.0 103 69.9
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 5.9e-35 151.0 103 69.9
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 5.9e-35 151.0 103 69.9
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 7.8e-35 150.6 103 69.9
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 1.3e-34 149.8 103 68.9
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 1.3e-34 149.8 103 68.9
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 1.7e-34 149.4 103 69.9
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 2.3e-34 149.1 101 71.3
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 2.3e-34 149.1 101 71.3
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.3e-34 149.1 109 68.8
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 2.9e-34 148.7 101 67.3
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 2.9e-34 148.7 103 69.9
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 3.8e-34 148.3 103 67.0
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 5.0e-34 147.9 103 68.9
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 8.6e-34 147.1 103 68.9
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 1.1e-33 146.7 103 69.9
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 1.1e-33 146.7 105 67.6
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 2.5e-33 145.6 103 70.9
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 2.5e-33 145.6 105 66.7
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 2.5e-33 145.6 105 66.7
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 2.8e-32 142.1 103 68.0
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 3.6e-32 141.7 103 65.0
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 2.6e-30 135.6 103 65.0
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 3.4e-30 135.2 103 65.0
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 8.3e-29 130.6 111 60.4
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 1.1e-28 130.2 102 60.8
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 7.0e-28 127.5 103 62.1
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 9.2e-28 127.1 87 70.1
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 2.0e-27 125.9 112 58.9
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 7.8e-27 124.0 82 72.0
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 7.3e-25 117.5 78 75.6
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 1.6e-16 89.7 79 55.7
Oeu063006.1 Olea europaea HOM05D001351 ORTHO05D001203 1.8e-15 86.3 71 60.6
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 2.2e-13 79.3 52 67.3
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 6.6e-10 67.8 100 37.0
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 2.8e-08 62.4 99 36.4
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 5.2e-07 58.2 32 81.2


User provided reference genes

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