Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 0.0e+00 1105.5 564 100.0
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 5.3e-203 711.4 495 71.9
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 2.2e-196 689.5 487 70.0
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.1e-195 687.2 522 67.4
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.0e-194 682.9 527 65.7
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 4.5e-194 681.8 505 68.1
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 1.0e-193 680.6 526 66.3
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 8.5e-193 677.6 507 68.6
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.4e-192 676.8 501 67.3
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 2.5e-192 676.0 561 63.1
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 4.2e-192 675.2 500 67.0
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 5.5e-192 674.9 491 69.5
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 7.2e-192 674.5 525 67.0
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 7.2e-192 674.5 492 69.9
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.2e-191 673.7 556 62.4
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.2e-191 673.7 508 66.5
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 4.7e-191 671.8 489 68.7
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 1.0e-190 670.6 507 68.0
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 1.8e-190 669.8 553 63.3
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.8e-190 669.8 532 65.4
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 5.2e-190 668.3 516 66.5
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 5.2e-190 668.3 492 68.9
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 8.8e-190 667.5 556 62.1
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 1.1e-189 667.2 491 67.8
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.5e-189 666.8 530 63.4
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 2.2e-188 662.9 496 67.3
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 3.7e-188 662.1 490 67.6
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 4.8e-188 661.8 491 68.2
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 4.8e-188 661.8 521 65.1
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 4.8e-188 661.8 501 64.9
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.8e-187 659.8 510 66.1
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 2.4e-187 659.4 493 66.5
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 3.1e-187 659.1 532 64.5
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 4.1e-187 658.7 514 65.0
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 4.1e-187 658.7 547 62.2
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 7.0e-187 657.9 496 67.9
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 7.0e-187 657.9 524 63.9
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.2e-186 657.1 532 63.0
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.6e-186 656.8 501 66.5
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 2.0e-186 656.4 487 68.4
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 4.5e-186 655.2 489 67.7
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 5.9e-186 654.8 513 66.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 5.9e-186 654.8 537 63.7
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.0e-185 654.1 532 63.0
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 2.2e-185 652.9 492 67.3
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 3.8e-185 652.1 496 64.7
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 5.0e-185 651.7 488 66.8
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 5.0e-185 651.7 487 68.2
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 6.5e-185 651.4 481 68.2
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 6.5e-185 651.4 528 65.3
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 6.5e-185 651.4 496 67.1
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 1.1e-184 650.6 516 64.9
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.5e-184 650.2 488 65.4
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.9e-184 649.8 497 65.2
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 2.5e-184 649.4 505 65.1
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 2.5e-184 649.4 491 67.8
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.5e-184 649.4 501 66.5
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.5e-184 649.4 487 68.2
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 9.4e-184 647.5 490 67.6
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.2e-183 647.1 491 67.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.7e-183 646.0 498 66.3
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 8.0e-183 644.4 520 64.6
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.0e-182 644.0 487 66.9
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.4e-182 643.7 497 66.0
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 2.3e-182 642.9 488 67.0
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 2.3e-182 642.9 492 66.9
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 4.0e-182 642.1 501 63.7
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 4.0e-182 642.1 512 63.3
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.2e-181 640.6 463 69.1
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 2.0e-181 639.8 487 64.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.0e-181 639.8 498 65.9
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 7.5e-181 637.9 501 63.3
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.7e-180 636.7 513 64.7
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.7e-180 636.7 506 65.2
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.2e-180 636.3 490 65.5
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 2.8e-180 636.0 556 61.3
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 3.7e-180 635.6 487 65.5
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 6.3e-180 634.8 508 63.6
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.4e-179 633.6 489 65.0
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 1.8e-179 633.3 489 65.0
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.8e-179 633.3 498 63.7
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.4e-179 632.9 487 64.7
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 3.1e-179 632.5 489 65.0
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.1e-179 632.5 528 62.7
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 7.0e-179 631.3 489 64.8
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.0e-178 629.8 514 62.5
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 2.7e-178 629.4 489 64.8
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.1e-176 624.0 514 61.7
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 1.9e-176 623.2 492 64.0
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 5.5e-176 621.7 478 65.7
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 2.7e-175 619.4 487 63.2
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.0e-174 617.5 492 65.0
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.0e-174 617.5 504 62.3
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.8e-171 606.7 514 62.1
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 7.7e-170 601.3 528 60.8
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 3.6e-167 592.4 510 59.0
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 8.0e-167 591.3 477 64.4
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.3e-164 583.9 620 54.0
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 2.7e-162 576.2 436 65.6
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 4.7e-159 565.5 526 57.2
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.9e-155 553.5 636 49.1
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 7.3e-144 515.0 462 59.7
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.4e-139 500.0 488 54.7
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.6e-138 497.3 387 64.9
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.7e-137 493.8 409 60.4
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.6e-125 453.4 337 69.7
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 4.2e-115 419.5 372 62.4
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.1e-112 411.4 561 43.3
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.6e-90 337.8 260 64.2
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 4.6e-90 336.3 256 66.0
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 4.2e-67 260.0 369 43.9
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.0e-60 236.5 468 36.8
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.9e-59 234.6 192 60.9
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 3.6e-58 230.3 280 48.6
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 5.7e-56 223.0 168 64.9
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.4e-54 218.4 254 44.9
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.6e-50 204.9 155 66.5
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-46 191.8 132 67.4
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 5.4e-46 189.9 159 59.1
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 2.0e-45 188.0 157 61.1
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 2.9e-44 184.1 163 64.4
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 4.3e-43 180.3 152 65.8
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 4.1e-38 163.7 127 62.2
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 2.1e-34 151.4 97 73.2
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.8e-33 148.3 217 41.5
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.5e-32 145.2 101 73.3
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.5e-32 145.2 101 73.3
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 3.0e-28 131.0 125 60.8
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.6e-27 126.7 156 46.8
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.1e-26 124.8 171 42.1
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.6e-24 116.3 294 32.7
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 4.1e-22 110.5 85 62.4
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 1.8e-17 95.1 138 40.6
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.9e-17 92.8 72 69.4
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 4.4e-16 90.5 205 29.3
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 6.4e-15 86.7 62 67.7
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 5.1e-12 77.0 75 53.3
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.3e-10 72.4 64 59.4


User provided reference genes

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