Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 0.0e+00 1370.9 686 100.0
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 0.0e+00 1108.6 702 83.0
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 5.1e-293 1010.7 695 75.8
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.4e-290 1002.7 674 77.4
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 1.1e-287 993.0 669 76.5
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 3.0e-285 984.9 723 71.9
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 1.5e-284 982.6 678 76.4
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 2.4e-282 975.3 672 75.7
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 3.1e-282 974.9 670 76.6
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 2.0e-281 972.2 588 84.2
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 5.9e-281 970.7 669 76.7
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.0e-280 969.9 668 75.9
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.0e-280 969.9 676 76.0
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 8.5e-280 966.8 717 72.2
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.1e-279 966.5 678 73.9
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.2e-278 963.0 664 75.2
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 4.0e-277 958.0 685 72.1
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 1.2e-276 956.4 680 73.7
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.2e-276 956.4 683 73.2
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 1.8e-274 949.1 700 71.4
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 2.4e-274 948.7 696 70.5
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.0e-272 943.3 667 72.4
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.0e-272 943.3 671 74.8
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.8e-272 941.4 671 73.6
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.9e-271 939.1 667 74.1
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 2.5e-271 938.7 689 71.4
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 7.2e-271 937.2 667 73.6
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 2.7e-270 935.3 663 74.8
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.0e-269 933.3 699 70.4
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 3.0e-269 931.8 667 73.3
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 1.5e-268 929.5 655 73.6
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.0e-268 929.1 633 76.1
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.4e-268 928.3 635 76.2
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.4e-268 928.3 644 75.9
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 7.5e-268 927.2 687 70.7
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.3e-267 926.4 658 73.6
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 3.7e-267 924.9 669 73.5
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 8.3e-267 923.7 640 74.2
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 3.1e-266 921.8 703 69.3
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.8e-264 914.8 653 72.3
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.1e-263 913.3 639 73.9
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.5e-263 912.9 560 81.2
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.5e-263 912.9 634 74.8
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.9e-263 912.5 656 72.6
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.3e-263 911.4 654 72.6
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 4.3e-263 911.4 634 74.1
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 5.6e-263 911.0 670 71.5
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 7.3e-263 910.6 636 73.7
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 7.3e-263 910.6 665 72.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 2.1e-262 909.1 670 71.2
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 3.6e-262 908.3 656 72.7
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 6.1e-262 907.5 650 72.6
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 1.0e-261 906.7 639 73.4
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.0e-261 906.7 660 73.0
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.0e-261 906.7 660 73.0
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 1.8e-261 906.0 575 79.8
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.5e-260 902.9 642 72.9
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 1.5e-260 902.9 653 72.1
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 2.0e-260 902.5 642 72.9
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 3.4e-260 901.7 671 71.7
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 3.4e-260 901.7 755 65.8
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 4.4e-260 901.4 653 72.1
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 7.5e-260 900.6 559 81.4
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 2.2e-259 899.0 660 70.9
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 3.7e-259 898.3 613 77.3
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.4e-258 896.3 657 71.1
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 1.2e-257 893.3 658 71.6
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.6e-257 892.9 586 77.1
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.6e-257 892.9 653 71.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.0e-257 892.5 654 71.1
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 2.7e-257 892.1 588 76.9
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 5.9e-257 891.0 693 67.5
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 7.8e-257 890.6 714 66.4
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.1e-255 886.7 556 79.1
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 5.6e-255 884.4 507 85.2
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.7e-254 881.3 636 73.3
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.3e-253 879.0 690 68.6
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 7.5e-252 874.0 622 73.2
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.7e-251 872.8 671 70.8
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.4e-250 869.8 519 81.5
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.5e-247 859.8 652 71.2
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 7.3e-247 857.4 664 67.6
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 6.2e-246 854.4 650 67.7
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 4.0e-245 851.7 656 68.4
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 4.1e-242 841.6 621 72.5
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 9.2e-242 840.5 656 67.2
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.3e-240 836.6 631 68.5
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.3e-240 835.9 652 67.8
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.1e-238 829.3 670 68.1
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 3.4e-236 822.0 472 83.7
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.8e-236 821.2 640 70.2
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.4e-234 816.6 718 62.0
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 3.1e-229 798.9 652 65.5
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 5.2e-229 798.1 642 66.5
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.6e-214 748.8 560 71.2
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.5e-210 734.9 526 73.8
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 2.1e-206 723.0 540 66.9
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 8.4e-203 711.1 673 56.9
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.0e-195 687.6 500 66.8
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.3e-195 687.2 651 56.8
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.2e-190 669.8 390 81.3
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.8e-189 666.8 344 91.3
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.1e-170 604.4 575 52.9
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.7e-169 599.7 686 54.4
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 8.2e-166 588.2 490 58.2
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.0e-164 583.6 361 77.6
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.9e-162 577.0 470 60.2
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 5.0e-147 525.8 490 60.4
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.8e-137 493.4 490 59.4
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 4.9e-126 456.1 500 48.2
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.5e-119 434.5 482 52.9
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 4.9e-118 429.5 566 43.5
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.6e-115 419.1 236 81.8
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.8e-102 376.7 214 85.5
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 6.4e-102 375.9 680 37.9
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.2e-95 355.1 509 38.7
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 9.3e-93 345.5 179 91.6
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.2e-87 328.6 263 65.8
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.9e-78 297.4 359 52.4
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.4e-72 277.7 157 80.9
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.8e-59 235.0 172 66.9
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 4.8e-49 200.3 297 48.5
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 7.2e-45 186.4 100 89.0
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.8e-41 174.5 244 49.2
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.9e-38 164.5 253 46.2
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.1e-37 162.5 252 46.0
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 6.1e-28 130.2 88 76.1
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.4e-19 102.4 237 37.1
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 4.6e-15 87.4 104 52.9
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 4.6e-15 87.4 76 63.2
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.0e-14 86.3 202 37.6
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.9e-14 84.3 161 42.9
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.9e-13 82.0 161 42.2
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 8.9e-11 73.2 161 41.6
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-08 66.2 144 39.6


User provided reference genes

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