Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.3e-141 503.8 244 100.0
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-128 463.4 238 94.1
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-107 393.7 232 83.2
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.5e-93 345.9 238 73.1
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.5e-93 345.9 238 73.1
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.9e-82 308.1 207 72.5
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.9e-82 308.1 207 72.5
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 6.9e-75 284.6 232 59.5
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.1e-67 260.8 232 54.7
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 9.1e-67 257.7 247 52.2
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.9e-57 226.1 244 48.4
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 5.5e-56 221.9 159 66.0
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.5e-56 221.9 207 57.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.5e-53 213.8 262 43.5
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 2.2e-52 209.9 232 48.7
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 3.7e-52 209.1 241 45.2
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 1.1e-51 207.6 237 46.0
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 9.1e-51 204.5 239 46.4
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.2e-50 204.1 227 48.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.5e-50 202.2 237 45.6
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.2e-49 199.9 231 44.2
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.1e-48 197.6 248 44.4
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.9e-48 196.8 239 44.8
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 5.5e-48 195.3 234 45.3
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.6e-47 193.7 234 44.4
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 3.6e-47 192.6 233 44.6
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 4.7e-47 192.2 234 44.4
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 8.0e-47 191.4 236 43.6
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.0e-46 191.0 263 38.8
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-46 190.3 236 40.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.3e-46 189.9 236 42.4
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 6.8e-46 188.3 236 40.3
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.8e-46 188.3 237 40.9
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 2.0e-45 186.8 222 44.6
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.4e-45 185.7 226 45.1
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.3e-44 184.1 230 43.9
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 3.1e-43 179.5 232 43.1
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 4.1e-43 179.1 242 41.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.4e-43 178.7 232 42.2
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 7.0e-43 178.3 232 43.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 9.1e-43 177.9 238 42.9
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 2.0e-42 176.8 239 42.3
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.5e-42 176.0 233 42.1
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 2.9e-41 172.9 234 41.5
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.6e-41 171.4 232 40.5
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.5e-40 170.6 242 40.9
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.5e-40 170.6 238 42.0
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 4.2e-40 169.1 232 40.9
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 7.2e-40 168.3 242 40.5
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 9.5e-40 167.9 151 54.3
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.6e-39 167.2 238 39.9
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.6e-39 166.0 237 40.1
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 4.7e-39 165.6 220 42.3
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 8.0e-39 164.9 237 40.9
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.4e-38 164.1 222 39.6
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.4e-38 164.1 261 37.5
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 2.3e-38 163.3 222 39.6
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 4.0e-38 162.5 235 42.6
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.8e-38 161.8 225 38.2
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 6.8e-38 161.8 279 38.4
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.0e-37 160.2 231 39.0
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 2.0e-37 160.2 235 39.6
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.4e-37 159.5 234 39.7
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 3.4e-37 159.5 157 51.0
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 4.4e-37 159.1 235 40.9
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 5.7e-37 158.7 238 39.1
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.7e-36 157.1 232 40.1
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 2.2e-36 156.8 235 38.3
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 2.2e-36 156.8 163 49.1
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.7e-36 156.0 237 39.2
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 3.7e-36 156.0 235 37.9
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 8.3e-36 154.8 231 40.3
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 8.3e-36 154.8 235 37.0
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.1e-35 154.5 235 39.1
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.1e-35 154.5 232 40.9
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.8e-35 153.7 265 34.3
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.4e-35 153.3 235 39.1
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 3.1e-35 152.9 243 37.9
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 7.0e-35 151.8 250 38.8
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.6e-34 150.6 248 39.1
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.8e-34 148.3 235 39.6
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.8e-34 148.3 235 39.6
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.3e-33 147.5 153 47.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.7e-33 147.1 242 38.0
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 2.3e-33 146.7 249 35.7
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 5.0e-33 145.6 249 36.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 8.6e-33 144.8 157 47.8
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.3e-32 141.7 162 50.6
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 9.5e-32 141.4 235 38.3
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.1e-31 140.2 240 36.2
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 9.8e-29 131.3 166 44.6
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 2.2e-28 130.2 160 46.2
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 2.2e-28 130.2 239 35.1
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.7e-28 129.4 234 35.5
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 3.7e-28 129.4 241 36.9
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 4.9e-28 129.0 241 35.3
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 6.4e-28 128.6 236 36.0
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.1e-27 127.9 238 36.1
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.4e-27 127.5 236 36.4
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 5.4e-27 125.6 154 42.9
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 7.0e-27 125.2 236 36.0
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 9.2e-27 124.8 241 36.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-26 124.4 236 35.2
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.2e-26 124.4 236 35.2
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.0e-26 123.6 226 35.8
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 2.0e-26 123.6 153 39.9
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 2.7e-26 123.2 239 35.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.7e-26 123.2 239 34.7
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.5e-26 122.9 259 34.0
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 4.7e-23 112.5 240 32.9
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 3.1e-22 109.8 246 32.9
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 3.4e-21 106.3 236 31.8
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 5.8e-21 105.5 249 30.5
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 2.2e-20 103.6 248 30.6
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 6.4e-20 102.1 160 40.0
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.4e-19 100.9 224 33.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.3e-16 89.4 231 30.7
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 4.3e-16 89.4 231 30.7
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 5.6e-16 89.0 110 46.4
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.3e-16 88.6 218 30.3
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.3e-14 83.6 144 38.2
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.5e-13 80.9 81 49.4
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.5e-13 80.9 153 37.9
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 1.7e-12 77.4 214 29.4
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 8.3e-12 75.1 198 31.3
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.4e-11 74.3 153 35.9
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.4e-11 74.3 143 34.3
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.6e-10 69.3 161 31.7
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 6.0e-10 68.9 191 28.8
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.0e-09 68.2 88 38.6
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 1.3e-09 67.8 121 35.5
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.3e-09 67.8 173 32.4
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.3e-09 67.0 138 31.9
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 8.6e-09 65.1 81 44.4
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.5e-08 64.3 153 30.1
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 4.3e-08 62.8 81 39.5
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 4.3e-08 62.8 181 30.4
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 1.2e-07 61.2 90 37.8
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.1e-07 60.5 152 28.3
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.8e-07 60.1 178 28.7
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.7e-07 59.3 159 32.1
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.1e-07 58.5 185 28.6
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.4e-06 57.8 162 25.9
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 4.0e-06 56.2 145 28.3
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 4.0e-06 56.2 145 28.3
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 6.8e-06 55.5 40 62.5
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.8e-06 55.5 183 26.8
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 8.9e-06 55.1 74 40.5


User provided reference genes

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