Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.9e-134 481.9 242 100.0
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 5.5e-125 451.1 242 93.4
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.0e-122 442.6 241 90.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 3.7e-113 411.8 235 86.4
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.9e-112 409.5 236 85.2
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.6e-111 406.4 242 81.4
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 6.0e-111 404.4 241 83.0
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.0e-110 403.7 241 84.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.3e-110 402.5 240 82.1
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 3.0e-110 402.1 240 80.8
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 6.6e-110 401.0 240 80.8
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 8.6e-110 400.6 241 80.5
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 3.3e-109 398.7 241 80.1
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-108 396.7 241 79.7
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.6e-108 396.4 236 83.5
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.6e-108 396.4 241 79.7
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.8e-108 395.6 241 79.7
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.6e-108 395.2 241 80.1
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 6.2e-108 394.4 240 77.9
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.1e-107 393.7 241 80.1
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.8e-107 392.9 241 79.3
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 2.3e-107 392.5 241 78.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.2e-106 390.2 241 78.4
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 2.0e-106 389.4 241 79.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.6e-106 389.0 241 78.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.6e-106 389.0 241 78.8
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 3.4e-106 388.7 241 78.0
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 9.8e-106 387.1 241 76.8
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 9.8e-106 387.1 241 77.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.7e-105 386.3 241 80.1
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.2e-105 386.0 241 75.9
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 4.9e-105 384.8 240 78.3
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 6.4e-105 384.4 233 81.1
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 6.4e-105 384.4 232 78.9
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.1e-104 383.6 231 80.1
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.1e-104 383.6 240 78.3
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.4e-104 383.3 235 79.1
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.4e-104 383.3 242 78.5
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.4e-104 383.3 241 77.2
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.4e-104 383.3 240 77.9
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.9e-104 382.9 241 76.8
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.4e-104 382.5 231 79.7
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.4e-104 382.5 241 77.2
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.4e-104 382.5 249 74.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 2.4e-104 382.5 241 77.2
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.4e-104 382.5 241 77.6
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.2e-104 382.1 240 77.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 3.2e-104 382.1 241 75.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 3.2e-104 382.1 240 78.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.2e-104 382.1 241 76.3
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 4.1e-104 381.7 238 78.2
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 9.2e-104 380.6 231 78.8
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 9.2e-104 380.6 230 79.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.2e-103 380.2 231 79.7
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-103 380.2 239 77.4
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-103 380.2 239 77.4
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.6e-103 379.8 241 78.0
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.6e-103 379.8 231 79.7
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 2.1e-103 379.4 274 70.4
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.1e-103 379.4 241 75.9
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.6e-103 378.3 241 78.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.3e-102 376.7 232 78.0
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 3.9e-102 375.2 233 78.5
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.5e-101 373.2 241 73.9
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.5e-101 373.2 222 82.0
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.5e-101 373.2 260 72.3
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.5e-101 372.5 241 76.8
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.3e-101 371.7 239 74.9
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 5.6e-101 371.3 230 77.8
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 6.2e-100 367.9 239 74.9
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.4e-99 366.7 240 74.6
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 5.2e-99 364.8 228 79.4
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 5.2e-99 364.8 212 84.0
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 8.9e-99 364.0 340 57.1
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.5e-98 363.2 239 74.9
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.5e-98 363.2 233 75.1
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.5e-98 363.2 213 82.2
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.6e-98 362.5 266 70.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.4e-98 361.7 240 76.2
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 7.6e-98 360.9 233 74.2
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 7.6e-98 360.9 202 86.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.7e-97 359.8 237 75.1
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 3.7e-97 358.6 239 74.9
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.4e-97 357.8 236 75.4
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.4e-96 355.9 286 64.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.6e-95 353.2 239 72.8
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.6e-95 353.2 239 72.8
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.6e-95 353.2 239 72.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.6e-95 353.2 233 73.8
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 2.1e-95 352.8 241 72.2
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 2.7e-95 352.4 211 80.6
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.0e-94 350.5 199 84.4
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.3e-94 350.1 283 64.3
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.7e-94 349.7 239 72.8
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 5.1e-94 348.2 239 70.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 5.1e-94 348.2 239 72.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.1e-93 347.1 239 69.9
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 2.5e-93 345.9 242 72.3
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.1e-91 340.5 229 73.4
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.4e-90 335.1 239 69.0
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 5.8e-90 334.7 241 68.9
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.7e-89 333.2 202 79.2
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.7e-86 323.2 214 73.8
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.3e-84 317.0 209 72.2
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 3.6e-84 315.5 241 67.6
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.4e-82 308.9 176 83.5
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 3.8e-81 305.4 190 76.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 3.3e-77 292.4 239 63.2
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 6.4e-73 278.1 231 60.2
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 7.1e-72 274.6 229 56.8
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.1e-71 273.1 171 76.6
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-69 267.3 167 75.4
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 7.4e-69 264.6 226 57.1
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.3e-67 258.5 149 83.2
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.6e-63 246.9 145 82.1
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.9e-59 231.5 141 81.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.9e-59 231.5 141 81.6
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.2e-56 222.2 127 89.0
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.3e-52 210.7 192 54.2
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.3e-52 210.7 133 75.9
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.4e-51 207.2 125 76.8
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 6.5e-49 198.4 223 45.3
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 6.5e-49 198.4 182 58.8
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-48 196.4 120 80.8
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 2.5e-48 196.4 121 78.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.5e-48 196.4 134 68.7
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 5.5e-48 195.3 120 80.0
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.1e-47 193.4 170 59.4
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.5e-45 187.2 120 75.0
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.2e-42 177.6 230 44.8
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.9e-39 164.9 129 68.2
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.4e-35 154.1 121 65.3
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.1e-35 152.5 101 78.2
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 7.0e-35 151.8 155 52.9
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.3e-33 147.5 121 66.9
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 7.2e-32 141.7 85 76.5
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 3.6e-31 139.4 181 43.6
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 7.0e-27 125.2 91 63.7
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 9.1e-27 124.8 69 81.2
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.0e-26 123.6 219 36.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.3e-25 120.9 100 67.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 6.5e-25 118.6 77 67.5
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.2e-24 115.9 157 38.2
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.1e-23 113.6 106 56.6
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.7e-23 113.2 72 76.4
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 4.8e-20 102.4 184 33.2
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.8e-19 100.5 54 87.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 8.5e-17 91.7 51 78.4
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 1.4e-14 84.3 163 39.3
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.8e-14 84.0 53 71.7
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.7e-09 67.4 39 79.5
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 2.1e-07 60.5 33 75.8
Actinidia19316 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.6e-07 59.7 43 79.1
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 8.9e-06 55.1 30 83.3


User provided reference genes

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