Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 0.0e+00 1467.6 726 100.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 0.0e+00 1117.1 722 77.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.0e-299 1031.6 735 74.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.9e-291 1004.6 726 70.1
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 8.5e-270 933.7 730 66.2
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.9e-216 756.5 739 56.0
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-215 753.8 744 55.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.6e-215 753.4 744 55.1
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.9e-213 746.5 725 55.7
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 3.3e-213 745.7 726 54.7
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.2e-212 743.8 736 53.1
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.9e-208 729.9 752 52.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.2e-207 727.2 739 53.5
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.7e-204 715.3 734 53.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 3.7e-201 705.7 733 52.3
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.0e-198 697.6 870 47.9
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.0e-198 696.0 763 50.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.3e-197 692.6 756 52.1
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 6.2e-196 688.3 707 53.6
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.0e-195 685.6 732 51.4
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.4e-193 678.3 742 50.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.4e-192 677.2 739 50.3
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.4e-192 677.2 742 50.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.9e-192 676.8 725 53.0
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 6.0e-191 671.8 726 52.5
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.3e-190 670.6 748 50.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.9e-190 669.1 726 52.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.5e-189 666.4 745 51.3
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.3e-189 666.0 748 49.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 4.3e-189 665.6 735 51.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.6e-189 665.2 603 58.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.1e-188 663.3 730 50.5
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.8e-188 662.9 718 52.6
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 6.2e-188 661.8 764 50.0
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 8.1e-188 661.4 740 50.3
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.9e-187 658.3 716 51.4
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.2e-186 657.5 722 51.7
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 3.4e-186 656.0 745 49.1
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.6e-186 654.8 722 51.5
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.2e-185 653.3 716 50.7
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.1e-183 646.7 748 48.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.0e-183 645.2 739 49.4
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.0e-182 642.9 711 51.3
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.9e-182 642.5 735 48.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.9e-182 642.5 710 51.1
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.9e-181 640.2 719 50.6
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.5e-181 639.8 739 49.1
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 4.8e-180 635.6 736 47.3
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.1e-179 634.4 717 50.6
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.8e-179 633.6 717 49.9
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.0e-178 630.2 713 50.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.0e-178 630.2 747 47.5
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 4.5e-178 629.0 712 49.6
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.7e-177 627.1 689 52.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 3.5e-175 619.4 728 48.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.1e-173 614.4 714 48.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.9e-173 613.6 735 46.0
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.9e-173 613.6 709 49.5
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.4e-171 606.7 752 47.1
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-170 603.2 752 47.1
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-169 600.1 752 46.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.2e-169 600.1 716 47.2
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 4.9e-169 599.0 731 46.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.9e-167 591.7 745 45.4
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 4.8e-164 582.4 620 52.3
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.4e-163 580.9 709 47.0
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.8e-163 580.5 715 47.1
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.0e-163 578.2 727 44.0
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.9e-162 575.5 742 45.1
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.6e-162 575.1 718 47.2
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.3e-161 574.3 716 45.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.9e-161 573.2 726 43.8
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 3.8e-161 572.8 527 58.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.1e-160 571.2 708 45.8
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.2e-160 569.7 716 46.9
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 9.3e-160 568.2 404 68.8
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-158 564.3 751 44.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 3.9e-158 562.8 735 44.4
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 5.9e-154 548.9 752 43.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 5.5e-152 542.3 741 43.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.1e-151 540.4 697 44.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 3.6e-151 539.7 794 41.8
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.7e-148 530.8 780 41.5
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.8e-145 519.6 720 45.6
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 5.0e-145 519.2 712 42.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.4e-142 511.1 504 55.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.9e-142 509.6 743 42.7
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.9e-142 509.6 432 60.6
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.4e-141 505.4 688 44.6
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.0e-137 495.0 732 42.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.7e-137 494.2 725 39.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-137 494.2 548 50.7
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.9e-136 490.7 546 50.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.4e-134 484.6 709 43.7
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.3e-134 483.8 728 41.6
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 4.4e-133 479.6 682 40.9
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.2e-132 477.2 715 42.0
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.1e-131 474.9 714 42.4
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.9e-128 464.2 727 41.8
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.1e-127 460.7 469 53.1
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 1.5e-125 454.5 727 41.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.4e-125 453.0 727 41.3
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 5.7e-125 452.6 729 41.6
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.2e-122 444.9 713 40.5
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.2e-121 440.7 690 41.0
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-120 438.3 712 39.0
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 4.2e-120 436.4 724 38.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.4e-117 426.8 578 42.2
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 7.5e-117 425.6 716 39.5
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.2e-108 397.5 741 35.9
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 3.7e-108 396.7 693 37.5
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.7e-106 390.6 433 48.7
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.9e-105 386.7 545 43.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.1e-99 368.6 720 34.7
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.4e-94 351.7 488 44.1
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.1e-94 350.5 696 33.6
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.7e-92 343.6 398 47.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 3.2e-91 340.5 364 51.9
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 3.0e-89 334.0 731 34.5
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 4.0e-86 323.6 302 56.6
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.9e-80 304.7 551 37.2
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.3e-80 303.5 370 45.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.3e-71 275.4 396 42.2
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 6.2e-71 273.1 728 29.7
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.9e-60 236.9 170 67.1
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 3.2e-59 234.2 821 26.2
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 7.9e-58 229.6 239 54.4
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.5e-56 224.6 387 37.2
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.3e-51 206.1 630 25.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.5e-48 198.0 140 64.3
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.9e-44 184.5 498 31.9
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.5e-44 183.3 243 42.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.8e-41 175.3 124 67.7
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 3.3e-40 171.0 124 66.1
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.8e-39 167.9 509 28.1
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 7.7e-37 159.8 205 42.9
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.5e-35 154.8 267 35.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-34 152.5 251 38.6
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-31 142.5 587 23.7
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-30 139.4 122 54.9
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.0e-26 123.2 333 31.8
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 3.3e-24 117.9 154 39.0
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.9e-20 104.8 196 35.7
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.7e-18 98.2 175 40.0
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.0e-16 92.0 202 28.7
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.7e-13 81.6 145 36.6
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 5.9e-13 80.5 76 52.6
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.9e-12 78.2 196 29.1
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.5e-11 73.9 195 26.2
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 7.2e-11 73.6 242 29.8
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.4e-11 73.2 129 38.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.1e-10 72.0 100 43.0
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.7e-10 71.6 65 58.5
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 6.1e-10 70.5 289 23.9
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 1.0e-09 69.7 74 44.6
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.4e-09 69.3 61 57.4
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 4.0e-09 67.8 116 34.5
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.2e-08 66.2 53 52.8
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 3.4e-08 64.7 54 57.4
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.5e-08 63.5 88 39.8
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.7e-07 62.4 54 55.6
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.4e-06 59.3 124 35.5


User provided reference genes

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