Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 0.0e+00 1114.4 571 100.0
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 1.4e-248 862.8 530 84.0
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-240 836.6 537 80.1
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 4.4e-237 824.7 516 80.4
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 7.4e-237 823.9 498 82.7
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.3e-233 813.1 538 77.7
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.9e-233 812.0 497 81.7
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 2.5e-232 808.9 539 77.9
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 1.2e-231 806.6 510 80.4
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 3.6e-231 805.1 510 79.4
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 3.9e-230 801.6 541 74.7
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.1e-229 800.0 510 79.6
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 3.3e-229 798.5 504 79.4
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.7e-228 796.2 568 72.0
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.2e-226 790.0 556 74.1
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.6e-226 789.6 537 77.1
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.0e-226 789.3 503 76.9
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.7e-225 786.2 500 80.2
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.9e-225 785.4 552 72.8
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 5.0e-225 784.6 499 78.2
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 6.5e-225 784.3 552 72.6
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.5e-224 782.3 499 78.0
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 7.2e-224 780.8 499 78.0
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 2.7e-223 778.9 531 74.8
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 4.7e-223 778.1 552 72.3
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 6.1e-223 777.7 530 74.0
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.3e-222 775.8 540 73.0
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 2.3e-222 775.8 518 76.3
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 2.3e-222 775.8 497 76.7
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 5.2e-222 774.6 543 71.8
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 8.8e-222 773.9 494 78.3
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 8.8e-222 773.9 529 72.4
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 8.8e-222 773.9 497 75.5
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 1.5e-221 773.1 514 76.8
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 2.6e-221 772.3 519 75.0
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 3.4e-221 771.9 503 76.9
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 5.7e-221 771.2 516 76.9
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.7e-221 770.4 529 73.7
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 2.8e-220 768.8 493 75.5
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.1e-219 766.9 514 76.1
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.1e-219 766.9 516 76.7
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.8e-219 766.1 510 77.1
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.8e-219 766.1 510 76.7
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.1e-219 765.4 517 75.6
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 4.1e-219 765.0 510 76.9
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.2e-218 763.5 518 73.2
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 2.7e-218 762.3 501 76.2
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 5.9e-218 761.1 500 75.6
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.0e-217 760.4 482 78.8
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.3e-217 760.0 498 74.1
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 3.8e-217 758.4 498 76.1
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 5.0e-217 758.1 501 76.2
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 5.5e-216 754.6 494 76.9
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 1.2e-215 753.4 516 74.8
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 2.7e-215 752.3 555 70.8
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 4.7e-215 751.5 515 74.8
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 6.1e-215 751.1 501 74.9
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 2.3e-214 749.2 556 69.2
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 3.0e-214 748.8 502 74.3
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 3.0e-214 748.8 561 69.5
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 3.0e-214 748.8 518 74.3
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 6.8e-214 747.7 500 75.6
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.2e-213 746.9 485 76.7
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.0e-213 746.1 508 73.8
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 4.4e-213 745.0 491 76.4
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 7.5e-213 744.2 488 75.0
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 4.1e-211 738.4 490 76.1
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 3.5e-210 735.3 501 74.3
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 5.9e-210 734.6 520 70.8
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.8e-209 731.9 508 74.0
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 5.0e-209 731.5 502 74.3
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 5.0e-209 731.5 513 71.5
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.6e-207 726.5 513 71.5
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 8.9e-206 720.7 491 73.9
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 2.6e-205 719.2 495 73.1
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 6.3e-204 714.5 491 73.7
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 7.0e-203 711.1 491 73.3
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.6e-202 709.9 499 72.1
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 4.5e-202 708.4 499 72.1
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 4.5e-202 708.4 479 75.4
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 7.8e-202 707.6 502 72.1
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.3e-201 706.1 502 71.9
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 5.0e-201 704.9 502 71.9
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 8.6e-201 704.1 495 71.9
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.1e-200 703.7 500 71.4
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 3.3e-200 702.2 502 71.5
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.2e-199 700.3 493 70.6
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 1.2e-199 700.3 492 71.5
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.0e-198 697.2 499 70.9
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 5.2e-198 694.9 566 65.9
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 2.6e-197 692.6 583 65.0
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 4.4e-197 691.8 492 70.3
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 2.2e-196 689.5 495 71.1
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 2.4e-195 686.0 437 77.1
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.6e-191 673.3 553 63.3
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 8.9e-182 641.0 627 56.6
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.2e-179 632.5 546 60.4
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.4e-174 616.3 466 68.7
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.5e-173 613.6 489 64.2
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.4e-173 612.1 391 76.5
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 9.0e-166 587.8 491 61.1
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.2e-157 560.8 499 58.9
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.5e-157 560.5 489 59.5
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.1e-152 544.3 347 80.4
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.9e-152 543.5 495 58.4
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.3e-140 504.2 375 72.3
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 4.2e-131 472.6 410 59.0
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 4.8e-111 406.0 575 43.7
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 6.5e-108 395.6 264 73.9
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 3.1e-102 376.7 257 71.6
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.9e-81 305.4 460 43.9
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.4e-78 297.4 370 47.6
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 7.0e-78 295.8 280 56.8
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 9.5e-75 285.4 229 62.4
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 3.7e-71 273.5 177 75.7
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.8e-61 239.2 142 78.9
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 6.2e-58 229.6 158 72.8
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 6.2e-58 229.6 155 71.6
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.2e-56 225.3 244 48.8
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 4.6e-53 213.4 155 75.5
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-49 201.8 156 66.0
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.8e-49 201.4 132 79.5
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 2.1e-42 177.9 120 71.7
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.4e-41 175.3 146 62.3
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.0e-41 172.6 142 68.3
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.0e-41 172.6 142 68.3
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.0e-40 171.4 297 40.1
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 4.3e-35 153.7 171 53.8
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 1.3e-34 152.1 133 67.7
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 2.4e-33 147.9 97 74.2
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.0e-32 144.8 198 42.9
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 2.1e-26 124.8 112 59.8
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.2e-22 110.9 82 74.4
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.2e-16 92.4 62 67.7
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.7e-16 89.7 83 66.3
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 2.5e-14 84.7 193 31.1
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.6e-13 82.0 50 82.0
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.0e-12 79.3 201 30.3
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 3.1e-09 67.8 62 54.8
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 8.5e-07 59.7 149 30.2


User provided reference genes

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