Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 0.0e+00 1215.3 643 100.0
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.9e-289 998.8 629 82.5
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 3.4e-270 934.9 658 74.0
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 7.3e-233 810.8 660 65.0
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 2.1e-219 766.1 662 61.8
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 7.6e-214 747.7 663 60.5
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 2.7e-211 739.2 706 58.5
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 7.9e-211 737.6 665 63.0
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.6e-206 722.6 664 63.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.6e-203 713.4 622 61.3
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 4.6e-203 711.8 666 58.6
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.0e-202 710.7 670 58.8
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 3.3e-201 705.7 665 62.1
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 4.8e-200 701.8 730 53.4
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 5.9e-198 694.9 712 53.4
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 6.5e-197 691.4 714 54.8
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.1e-196 690.6 670 57.8
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.4e-196 690.3 671 57.1
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.2e-196 689.1 651 57.9
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 4.2e-196 688.7 660 57.7
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 2.1e-195 686.4 707 53.3
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 2.3e-194 682.9 706 53.3
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 2.5e-193 679.5 650 57.1
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 4.8e-192 675.2 728 56.5
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 8.2e-192 674.5 711 52.6
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.8e-191 673.3 690 55.1
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 4.1e-191 672.2 709 52.8
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 6.9e-191 671.4 711 52.5
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 3.8e-189 665.6 650 56.6
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 5.0e-189 665.2 668 53.6
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 1.1e-188 664.1 637 57.0
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.4e-188 663.7 661 55.4
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.9e-188 663.3 719 51.9
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.9e-188 663.3 705 51.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 3.2e-188 662.5 698 53.0
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 5.5e-188 661.8 711 52.6
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.7e-187 658.7 555 62.5
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.0e-186 657.5 714 51.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 6.7e-186 654.8 705 51.6
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.5e-185 653.7 693 53.7
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 8.2e-184 647.9 706 53.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 9.1e-183 644.4 668 53.1
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.5e-182 642.5 668 54.3
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 5.9e-182 641.7 769 49.3
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 5.0e-181 638.6 661 55.1
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.2e-179 634.0 700 51.9
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 6.1e-179 631.7 750 48.0
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.1e-177 627.5 758 47.6
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 3.3e-177 625.9 649 54.2
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 3.7e-176 622.5 715 49.8
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 3.7e-176 622.5 696 51.0
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 5.3e-175 618.6 695 51.2
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 2.6e-174 616.3 795 46.3
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 4.5e-174 615.5 669 52.2
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.3e-173 614.0 706 51.1
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 3.8e-173 612.5 663 52.3
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 6.5e-173 611.7 652 54.1
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.2e-171 607.4 717 49.1
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 3.6e-171 605.9 665 51.6
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 4.7e-171 605.5 656 54.0
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.3e-170 603.2 721 48.5
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 6.8e-170 601.7 708 48.3
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 8.8e-170 601.3 643 52.6
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.0e-169 600.1 704 48.4
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.3e-168 597.4 669 50.2
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.2e-166 590.9 664 50.6
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.5e-166 589.3 698 49.1
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 3.5e-166 589.3 712 49.3
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 4.5e-166 589.0 723 48.5
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 5.0e-165 585.5 647 51.9
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 3.2e-164 582.8 730 45.8
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 2.7e-163 579.7 654 51.8
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.5e-161 573.9 713 48.2
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.4e-161 572.8 713 48.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 9.8e-161 571.2 646 51.1
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 2.2e-160 570.1 651 52.2
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.3e-152 544.3 616 52.9
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.7e-152 543.9 722 46.3
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.8e-151 540.4 676 50.6
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.9e-148 530.4 645 49.6
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 6.2e-147 525.4 742 43.1
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 8.0e-147 525.0 738 43.2
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 8.9e-146 521.5 762 42.1
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.0e-145 520.4 619 53.8
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.2e-142 511.1 716 43.9
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 2.0e-142 510.4 733 42.6
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.6e-142 509.2 687 46.4
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.7e-141 507.3 764 41.9
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 6.6e-141 505.4 640 46.1
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 7.3e-140 501.9 736 42.1
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 1.0e-133 481.5 631 46.8
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 7.3e-132 475.3 640 43.9
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.2e-131 474.6 648 46.6
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.1e-131 473.8 686 44.3
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 8.1e-131 471.9 666 43.1
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.4e-130 471.1 863 37.3
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.2e-129 468.0 488 52.9
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.7e-120 437.6 821 37.0
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 4.9e-120 436.0 821 36.5
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.0e-118 429.1 463 52.3
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 1.5e-116 424.5 849 35.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 4.3e-116 422.9 856 34.9
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.6e-107 394.4 816 35.9
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 6.4e-104 382.5 731 36.8
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 3.5e-94 350.1 662 37.5
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.3e-91 341.7 666 36.6
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.8e-91 339.7 625 41.0
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.0e-89 334.3 650 36.2
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 3.5e-86 323.6 252 64.3
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.1e-79 302.0 653 37.1
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 2.8e-75 287.3 717 33.6
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.0e-72 278.9 318 50.0
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 3.6e-70 270.4 628 34.1
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.5e-65 253.4 273 52.4
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.3e-64 251.9 655 30.2
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 6.7e-61 239.6 888 26.9
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.4e-58 231.9 205 58.0
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 4.5e-57 226.9 333 42.3
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 9.1e-50 202.6 644 29.5
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 3.0e-45 187.6 176 54.5
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 3.0e-45 187.6 176 54.5
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.7e-43 181.8 126 67.5
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.4e-42 177.9 400 32.8
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 2.0e-41 174.9 131 69.5
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-33 149.1 174 43.7
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.2e-27 128.3 103 61.2
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.2e-25 122.5 82 74.4
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 6.6e-24 116.7 205 39.0
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.4e-20 104.4 93 55.9
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.0e-16 92.8 128 41.4
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.9e-15 88.6 154 40.9
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 9.5e-15 86.3 100 45.0
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 5.1e-08 63.9 90 46.7


User provided reference genes

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