Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 2.9e-238 828.2 422 100.0
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 3.7e-185 651.7 472 76.3
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 2.4e-171 605.9 428 75.5
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 2.7e-159 565.8 401 76.8
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 1.9e-157 559.7 401 76.3
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 1.2e-146 523.9 358 72.9
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 2.4e-144 516.2 365 73.7
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 1.3e-142 510.4 400 68.8
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 3.9e-142 508.8 362 72.7
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 6.7e-142 508.1 414 64.7
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 7.4e-141 504.6 356 70.5
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 9.6e-141 504.2 356 71.9
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 1.3e-140 503.8 348 72.1
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 1.3e-140 503.8 421 66.3
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 2.1e-140 503.1 345 73.6
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 2.8e-140 502.7 335 74.3
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 4.8e-140 501.9 356 70.2
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 1.4e-139 500.4 375 69.1
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 1.4e-139 500.4 364 70.6
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 1.8e-139 500.0 389 71.2
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 2.4e-139 499.6 340 73.5
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.4e-139 499.6 338 72.5
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 3.1e-139 499.2 339 73.7
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 4.0e-139 498.8 354 70.1
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 6.9e-139 498.0 373 70.5
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 9.0e-139 497.7 324 76.2
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 9.0e-139 497.7 392 68.6
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 2.0e-138 496.5 371 69.8
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 7.6e-138 494.6 323 73.7
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 1.7e-137 493.4 333 73.9
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 1.7e-137 493.4 371 69.0
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 1.7e-137 493.4 380 69.7
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 9.3e-136 487.6 341 73.3
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 9.3e-136 487.6 317 76.0
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 1.0e-134 484.2 388 65.2
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 1.1e-133 480.7 390 66.7
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 3.3e-133 479.2 363 68.0
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 3.3e-133 479.2 325 74.5
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 4.3e-133 478.8 385 66.0
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 7.4e-133 478.0 305 74.4
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 9.7e-133 477.6 380 66.8
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 1.3e-132 477.2 313 73.5
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 2.2e-132 476.5 379 65.7
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 3.7e-132 475.7 309 76.4
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 6.3e-132 474.9 328 73.2
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.4e-131 473.8 350 67.1
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.8e-131 473.4 356 68.3
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 5.3e-131 471.9 372 66.7
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 1.2e-130 470.7 347 69.2
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 1.5e-130 470.3 375 65.6
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.0e-130 469.9 344 69.2
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 4.5e-130 468.8 330 71.5
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.5e-130 468.8 425 61.9
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 4.5e-130 468.8 344 70.1
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 1.3e-129 467.2 358 67.0
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 1.3e-129 467.2 348 69.3
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 1.3e-129 467.2 348 69.3
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.7e-129 466.8 333 68.5
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 2.2e-129 466.5 353 68.6
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 6.5e-129 464.9 346 69.1
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 3.2e-128 462.6 348 69.0
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 3.2e-128 462.6 341 68.0
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 4.2e-128 462.2 358 67.0
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 4.2e-128 462.2 404 61.1
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 5.5e-128 461.8 351 67.2
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 7.2e-128 461.5 349 69.1
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 9.3e-128 461.1 322 71.1
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 9.3e-128 461.1 304 72.4
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 1.2e-127 460.7 348 69.0
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 1.2e-127 460.7 347 69.5
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 1.2e-127 460.7 304 72.4
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 1.8e-126 456.8 348 68.4
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 3.9e-126 455.7 373 66.0
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 6.7e-126 454.9 303 72.3
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 1.9e-125 453.4 386 60.4
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 4.3e-125 452.2 366 62.8
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 4.8e-124 448.7 384 65.6
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 6.3e-124 448.4 397 65.2
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.5e-122 443.7 309 71.5
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 2.9e-121 439.5 329 66.9
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 4.2e-120 435.6 354 62.1
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 1.3e-113 414.1 366 60.7
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 7.2e-112 408.3 254 78.3
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 1.4e-110 404.1 331 66.2
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 2.0e-109 400.2 286 70.6
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 3.3e-109 399.4 375 56.3
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 2.8e-108 396.4 391 54.0
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.7e-105 387.1 328 61.6
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 5.0e-105 385.6 329 59.0
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 7.2e-104 381.7 297 66.0
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 4.7e-103 379.0 305 61.6
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 4.7e-103 379.0 305 61.6
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 3.8e-97 359.4 343 56.6
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 2.1e-95 353.6 303 57.1
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 8.0e-95 351.7 309 56.0
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 3.0e-94 349.7 220 75.5
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 2.6e-93 346.7 338 58.3
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 8.3e-92 341.7 305 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 5.9e-90 335.5 311 55.6
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 9.8e-85 318.2 305 54.4
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 6.3e-84 315.5 169 89.9
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 3.2e-75 286.6 191 75.4
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 4.1e-75 286.2 171 80.1
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.2e-74 284.6 249 60.6
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 1.7e-73 280.8 163 81.6
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.4e-67 261.2 282 56.0
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 2.8e-63 246.9 390 38.7
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 2.3e-62 243.8 412 38.1
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 4.6e-58 229.6 127 85.8
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 6.0e-50 202.6 196 56.6
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.3e-36 158.3 123 66.7
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 3.1e-30 137.1 95 68.4
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 2.7e-26 124.0 322 31.4
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.9e-19 101.3 57 89.5
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 8.7e-17 92.4 225 33.3
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 8.7e-17 92.4 51 80.4
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 6.1e-10 69.7 145 28.3
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 5.7e-08 63.2 71 47.9
PRCOL_00005231 Prasinoderma coloniale HOM05D007129 ORTHO05D008680 3.7e-07 60.5 172 30.8


User provided reference genes

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