Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 0.0e+00 1218.8 593 100.0
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 1.6e-271 939.1 589 78.9
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 4.1e-270 934.5 590 78.0
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 5.3e-270 934.1 596 78.2
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.3e-268 929.5 589 78.4
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 8.5e-268 926.8 589 77.2
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 4.2e-267 924.5 589 76.9
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.1e-266 920.6 593 76.4
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 7.9e-266 920.2 589 76.6
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 1.3e-265 919.5 601 75.2
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 1.8e-265 919.1 589 76.4
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 2.3e-265 918.7 589 77.6
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 3.0e-265 918.3 591 76.8
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 6.3e-263 910.6 589 76.1
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.4e-262 908.7 591 75.8
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 4.1e-262 907.9 590 75.6
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 2.6e-261 905.2 589 76.1
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 2.9e-260 901.7 590 75.8
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 3.8e-260 901.4 591 75.3
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 5.0e-260 901.0 590 76.4
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 1.4e-259 899.4 589 76.1
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 2.5e-259 898.7 589 75.2
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 7.2e-259 897.1 577 76.8
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.6e-258 896.0 592 75.3
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 3.6e-258 894.8 589 75.7
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 7.9e-258 893.6 590 74.4
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 2.3e-257 892.1 591 75.1
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 3.0e-257 891.7 589 75.4
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 3.9e-257 891.3 582 74.7
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 2.6e-256 888.6 584 74.5
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.3e-256 888.3 595 72.9
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 3.3e-256 888.3 594 75.6
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.2e-255 885.6 589 75.7
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 3.7e-255 884.8 592 73.5
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 4.8e-255 884.4 588 74.8
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 6.3e-255 884.0 589 73.7
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 1.1e-254 883.2 572 74.5
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.8e-254 882.5 589 75.2
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 2.4e-254 882.1 589 73.5
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 4.1e-254 881.3 590 73.2
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 4.1e-254 881.3 587 73.9
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 9.1e-254 880.2 576 76.0
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 9.1e-254 880.2 589 74.0
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.2e-253 879.8 587 73.9
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.2e-253 879.8 591 74.8
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 3.4e-253 878.2 592 73.1
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 4.5e-253 877.9 593 73.4
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 1.0e-252 876.7 587 73.6
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 1.7e-252 875.9 590 74.4
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 2.9e-252 875.2 591 74.1
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 2.9e-252 875.2 590 72.9
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 2.9e-252 875.2 576 75.5
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 1.4e-251 872.8 593 72.7
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 3.2e-251 871.7 587 72.9
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 3.2e-251 871.7 590 72.4
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 5.5e-251 870.9 593 72.0
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 7.2e-251 870.5 596 72.5
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 4.7e-250 867.8 539 77.7
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 4.7e-250 867.8 595 71.4
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 1.0e-249 866.7 590 72.5
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 1.0e-249 866.7 611 71.2
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.0e-249 866.7 574 73.7
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.4e-249 866.3 591 73.3
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 1.4e-249 866.3 591 73.1
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 1.8e-249 865.9 616 70.3
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 3.9e-249 864.8 594 72.1
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 2.6e-248 862.1 589 74.4
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 9.7e-248 860.1 593 72.0
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 6.3e-247 857.4 592 72.0
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 8.2e-247 857.1 593 71.8
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 1.1e-246 856.7 589 72.5
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.6e-245 852.8 590 72.9
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 1.6e-245 852.8 593 72.0
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 4.5e-245 851.3 595 70.3
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 4.5e-245 851.3 515 79.6
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 1.7e-244 849.4 594 71.9
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 8.5e-244 847.0 595 70.8
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 8.5e-244 847.0 595 70.8
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 2.5e-243 845.5 591 72.8
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 2.1e-242 842.4 590 71.5
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 1.8e-241 839.3 592 69.9
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 3.0e-241 838.6 592 69.8
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 5.2e-241 837.8 594 71.7
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 6.7e-241 837.4 593 70.0
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 3.7e-239 831.6 589 69.4
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 6.3e-239 830.9 538 76.0
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 2.0e-237 825.9 594 70.2
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 2.7e-237 825.5 593 69.0
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 2.2e-236 822.4 599 68.6
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.5e-235 819.7 590 69.7
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 5.5e-235 817.8 589 69.3
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 6.1e-234 814.3 590 69.7
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.0e-233 813.5 592 68.2
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 2.7e-229 798.9 531 72.5
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 4.2e-227 791.6 531 72.5
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 4.2e-227 791.6 527 72.5
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 1.0e-225 786.9 615 65.0
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.0e-225 786.9 531 72.1
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 3.7e-223 778.5 580 67.6
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 4.9e-223 778.1 530 70.9
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.6e-221 773.1 579 67.2
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 2.3e-217 759.2 576 65.8
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 3.2e-214 748.8 574 65.2
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 4.0e-209 731.9 525 68.2
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 2.5e-203 712.6 575 62.8
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 4.3e-203 711.8 456 77.0
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 4.3e-203 711.8 447 76.1
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 7.3e-203 711.1 566 65.0
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 2.1e-202 709.5 475 72.0
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.4e-201 706.8 585 62.7
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 7.8e-197 691.0 490 68.8
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.4e-190 670.2 487 69.8
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 6.9e-177 624.8 455 66.8
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.5e-176 623.6 378 79.4
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 5.1e-156 555.4 348 79.9
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 5.1e-148 528.9 460 61.1
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.7e-146 523.9 333 76.0
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 3.1e-145 519.6 271 93.4
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.2e-144 517.7 557 49.6
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 2.2e-143 513.5 527 50.9
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.6e-141 506.1 447 59.7
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 7.5e-123 445.3 502 47.2
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 7.5e-123 445.3 415 54.9
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 2.8e-122 443.4 500 48.4
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 1.6e-120 437.6 328 67.7
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.1e-94 351.7 236 75.8
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 8.0e-93 345.5 181 87.8
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.0e-87 328.6 181 86.2
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 6.6e-71 272.7 221 61.1
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.9e-58 230.7 134 78.4
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 4.3e-46 190.3 115 80.9
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 1.5e-43 181.8 103 81.6
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 2.4e-36 157.9 81 90.1
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 1.2e-27 129.0 68 86.8
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 1.1e-20 105.9 57 82.5
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 1.4e-20 105.5 53 88.7
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 3.1e-20 104.4 59 78.0
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 3.1e-20 104.4 59 78.0
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 2.5e-17 94.7 50 80.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 6.3e-13 80.1 78 52.6


User provided reference genes

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