Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 0.0e+00 1184.1 608 100.0
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.1e-214 750.4 599 68.8
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 2.1e-181 639.8 668 56.7
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 3.3e-174 615.9 676 53.7
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 4.3e-174 615.5 665 55.6
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 9.2e-169 597.8 666 53.5
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 2.8e-165 586.3 602 56.6
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 1.2e-163 580.9 667 54.3
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 2.7e-160 569.7 677 51.3
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 6.0e-160 568.5 568 57.7
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 9.0e-156 554.7 643 52.9
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 9.0e-156 554.7 667 52.2
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 6.4e-154 548.5 669 50.2
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 9.3e-153 544.7 675 49.9
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 6.6e-151 538.5 674 49.3
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.3e-149 534.3 708 48.3
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 2.8e-149 533.1 675 48.7
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 4.0e-148 529.3 663 49.8
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 4.9e-146 522.3 667 50.7
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 3.9e-143 512.7 668 48.7
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 2.9e-138 496.5 671 47.4
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 4.2e-137 492.7 503 58.4
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 6.0e-136 488.8 674 46.6
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 1.3e-133 481.1 671 46.3
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 1.5e-131 474.2 669 47.2
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 1.7e-130 470.7 672 46.6
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 2.1e-128 463.8 627 46.4
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 1.8e-127 460.7 668 46.0
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 3.0e-127 459.9 670 46.1
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 6.7e-127 458.8 656 46.6
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 8.7e-127 458.4 664 45.2
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 3.7e-125 453.0 708 43.6
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 4.5e-123 446.0 674 44.7
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 3.8e-122 443.0 635 46.5
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 4.2e-121 439.5 527 50.3
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 5.7e-118 429.1 670 43.0
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 1.7e-117 427.6 669 45.0
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.7e-117 427.6 662 45.0
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 4.8e-117 426.0 673 45.2
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 1.5e-115 421.0 560 47.9
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 4.5e-115 419.5 670 44.3
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 3.8e-114 416.4 657 43.5
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 9.4e-113 411.8 668 45.2
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 3.0e-111 406.8 685 42.2
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.4e-110 402.1 678 43.4
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 2.2e-109 400.6 690 42.5
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 4.8e-109 399.4 698 42.0
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 8.2e-109 398.7 684 42.5
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.8e-108 397.5 659 43.1
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 9.1e-108 395.2 570 46.3
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 3.8e-106 389.8 574 44.6
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 7.2e-105 385.6 668 41.5
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 3.6e-104 383.3 682 40.9
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 1.5e-102 377.9 717 39.6
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 8.2e-101 372.1 666 40.5
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 2.4e-100 370.5 666 41.0
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 1.6e-99 367.9 622 42.3
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 1.6e-99 367.9 670 42.1
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 3.5e-99 366.7 670 40.4
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 5.9e-99 365.9 671 39.9
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 1.3e-98 364.8 669 39.9
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.0e-98 362.8 676 40.1
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 7.2e-97 359.0 678 38.6
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 6.1e-96 355.9 667 40.2
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 1.0e-95 355.1 678 39.7
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 1.4e-95 354.8 679 39.6
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 4.0e-95 353.2 678 39.7
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 6.7e-95 352.4 615 40.3
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 8.8e-95 352.1 645 39.2
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 1.2e-94 351.7 465 47.5
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 4.5e-91 339.7 682 38.9
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 1.7e-90 337.8 678 39.2
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 2.2e-90 337.4 449 47.7
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 5.0e-90 336.3 668 39.7
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.5e-89 334.7 600 40.8
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 1.9e-89 334.3 679 39.3
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 2.5e-89 334.0 665 39.2
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 3.2e-89 333.6 679 37.6
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 7.2e-89 332.4 673 38.6
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 1.8e-87 327.8 682 39.3
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 1.8e-87 327.8 682 39.3
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 2.8e-85 320.5 648 38.4
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.9e-81 307.8 636 37.1
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.6e-78 297.4 641 37.3
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 1.7e-77 294.7 682 36.2
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 4.5e-75 286.6 628 36.5
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 7.3e-73 279.3 624 35.4
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 6.1e-72 276.2 535 39.4
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 3.4e-70 270.4 407 45.5
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 2.0e-67 261.2 670 34.2
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 2.7e-67 260.8 670 34.2
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 2.3e-66 257.7 666 34.4
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 8.9e-63 245.7 212 63.2
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 9.8e-62 242.3 606 35.6
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 4.9e-61 240.0 525 38.3
Lalb_Chr10g0105241 Lupinus albus HOM05D004863 ORTHO05D005802 4.9e-61 240.0 223 61.0
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.1e-59 234.6 633 31.0
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 7.8e-59 232.6 673 32.1
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 5.1e-58 229.9 423 40.4
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 9.2e-52 209.1 602 32.4
Medtr5g081270 Medicago truncatula HOM05D004863 ORTHO05D005802 1.2e-51 208.8 219 58.4
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.1e-51 208.0 264 47.7
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 3.0e-50 204.1 365 41.4
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 1.5e-49 201.8 258 47.3
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 2.8e-48 197.6 353 40.8
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 2.8e-48 197.6 353 40.8
HanXRQChr08g0221791 Helianthus annuus HOM05D004863 ORTHO05D005802 3.8e-45 187.2 272 44.9
TPR.G25337 Trifolium pratense HOM05D004863 ORTHO05D005802 3.5e-43 180.6 267 46.1
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 6.6e-42 176.4 421 35.6
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 1.4e-39 168.7 668 29.5
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 1.7e-37 161.8 399 34.3
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 2.7e-35 154.5 312 38.1
Solyc06g074860.2 Solanum lycopersicum HOM05D004863 ORTHO05D005802 2.5e-33 147.9 131 60.3
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 6.2e-32 143.3 396 33.6
MD04G1165800 Malus domestica HOM05D004863 ORTHO05D005802 3.1e-31 141.0 225 45.3
Peaxi162Scf00114g01013 Petunia axillaris HOM05D004863 ORTHO05D005802 6.9e-31 139.8 142 55.6
vmacro10020 Vaccinium macrocarpon HOM05D004863 ORTHO05D005802 1.2e-30 139.0 90 82.2
CDE02G3956 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 1.1e-28 132.5 150 52.7
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 1.4e-28 132.1 150 50.0
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 4.6e-27 127.1 505 26.5
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 7.9e-27 126.3 637 27.6
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 3.3e-25 120.9 182 44.5
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 7.4e-25 119.8 181 47.5
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 1.3e-21 109.0 326 29.8
Zm00001eb297000 Zea mays HOM05D004863 ORTHO05D005802 1.3e-16 92.4 129 41.1
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 2.8e-16 91.3 362 27.3
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 3.7e-16 90.9 113 45.1
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 2.4e-15 88.2 71 62.0
TPR.G38446 Trifolium pratense HOM05D000002 ORTHO05D000047 1.2e-14 85.9 126 43.7
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 7.6e-14 83.2 689 24.4
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 2.2e-13 81.6 170 39.4
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.8e-13 80.9 112 43.8
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 3.8e-13 80.9 109 44.0
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 1.1e-12 79.3 255 29.4
RcHm_v2.0_Chr0c11g0499571 Rosa chinensis HOM05D004863 ORTHO05D005802 1.4e-12 79.0 81 53.1
EL10Ac8g19299 Beta vulgaris HOM05D004863 ORTHO05D005802 1.9e-12 78.6 56 66.1
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 4.2e-12 77.4 132 35.6
PSO339G1811 Papaver somniferum HOM05D000294 ORTHO05D000177 4.2e-12 77.4 132 35.6
PSO832G1972 Papaver somniferum HOM05D000294 ORTHO05D000177 4.2e-12 77.4 132 35.6
PSO832G3441 Papaver somniferum HOM05D000294 ORTHO05D000177 4.2e-12 77.4 132 35.6
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 2.1e-11 75.1 229 32.8
BraA01t00992Z Brassica rapa HOM05D045410 ORTHO05D041625 1.0e-10 72.8 128 39.1
AagrBONN_evm.TU.Sc2ySwM_117.1674 Anthoceros agrestis HOM05D004863 ORTHO05D005802 1.1e-09 69.3 108 38.9
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 1.9e-09 68.6 141 34.0
RcHm_v2.0_Chr0c11g0499361 Rosa chinensis HOM05D004863 ORTHO05D005802 9.7e-09 66.2 45 68.9
RcHm_v2.0_Chr0c11g0499561 Rosa chinensis HOM05D004863 ORTHO05D005802 9.7e-09 66.2 45 68.9
Mapoly0041s0038 Marchantia polymorpha HOM05D004863 ORTHO05D005802 1.6e-08 65.5 684 23.1
A01p10460 Brassica napus HOM05D045410 ORTHO05D041625 2.8e-08 64.7 149 33.6
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 2.8e-08 64.7 143 36.4
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 1.5e-06 58.9 91 38.5
SHI28818 Sapria himalayana HOM05D004863 ORTHO05D005802 2.6e-06 58.2 45 73.3


User provided reference genes

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