Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0158100 Rhododendron simsii HOM05D003635 ORTHO05D004283 2.0e-280 968.4 479 100.0
Rhsim09G0157900 Rhododendron simsii HOM05D003635 ORTHO05D004283 4.8e-221 771.2 590 70.7
Dinv25952 Davidia involucrata HOM05D003635 ORTHO05D004283 1.4e-212 743.0 590 67.6
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 7.7e-211 737.3 590 66.6
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 1.3e-210 736.5 590 66.8
Gohir.A10G210700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 6.1e-208 727.6 592 66.0
Thecc.10G059000 Theobroma cacao HOM05D003635 ORTHO05D004283 1.4e-207 726.5 592 65.5
Gorai.011G245700 Gossypium raimondii HOM05D003635 ORTHO05D004283 2.3e-207 725.7 586 66.2
Haze_16985 Corylus avellana HOM05D003635 ORTHO05D004283 6.7e-207 724.2 590 65.9
Cfa001548 Carpinus fangiana HOM05D003635 ORTHO05D004283 1.1e-206 723.4 590 65.8
Gohir.D10G219000 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.1e-206 723.4 586 66.0
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 2.0e-206 722.6 590 65.9
Gorai.012G068000 Gossypium raimondii HOM05D003635 ORTHO05D004283 5.7e-206 721.1 592 65.0
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 7.4e-206 720.7 590 64.7
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 9.7e-206 720.3 590 65.9
QL08p057820 Quercus lobata HOM05D003635 ORTHO05D004283 1.3e-205 719.9 588 65.5
Gohir.A05G351700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 2.2e-205 719.2 592 64.9
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 2.2e-205 719.2 590 64.9
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 2.2e-205 719.2 591 64.3
Nn2g10520 Nelumbo nucifera HOM05D003635 ORTHO05D004283 2.8e-205 718.8 586 64.8
Atru.chr12.571 Acer truncatum HOM05D003635 ORTHO05D004283 3.7e-205 718.4 592 65.9
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 3.7e-205 718.4 587 65.4
Duzib114G0516 Durio zibethinus HOM05D003635 ORTHO05D004283 6.3e-205 717.6 592 64.7
Sc06g0001910 Simmondsia chinensis HOM05D003635 ORTHO05D004283 6.3e-205 717.6 590 65.1
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 1.1e-204 716.8 590 64.6
Oeu016870.1 Olea europaea HOM05D003635 ORTHO05D004283 2.4e-204 715.7 590 65.3
CiPaw.02G179700 Carya illinoinensis HOM05D003635 ORTHO05D004283 7.0e-204 714.1 592 64.9
COL.COLO4_10911 Corchorus olitorius HOM05D003635 ORTHO05D004283 7.0e-204 714.1 586 65.4
CiPaw.01G281100 Carya illinoinensis HOM05D003635 ORTHO05D004283 9.1e-204 713.8 592 65.2
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 1.5e-203 713.0 592 63.9
HanXRQChr08g0228691 Helianthus annuus HOM05D003635 ORTHO05D004283 2.0e-203 712.6 590 64.4
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 2.6e-203 712.2 590 64.9
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 2.6e-203 712.2 590 64.7
Ciclev10030532m.g Citrus clementina HOM05D003635 ORTHO05D004283 7.7e-203 710.7 592 64.9
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 7.7e-203 710.7 590 64.7
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 7.7e-203 710.7 592 64.2
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 7.7e-203 710.7 586 65.0
Duzib128G1000 Durio zibethinus HOM05D003635 ORTHO05D004283 1.0e-202 710.3 592 64.9
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 1.3e-202 709.9 592 64.2
ClCG02G013500 Citrullus lanatus HOM05D003635 ORTHO05D004283 1.7e-202 709.5 586 65.0
Lj5g0001158 Lotus japonicus HOM05D003635 ORTHO05D004283 3.8e-202 708.4 592 64.2
CsaV3_5G006650 Cucumis sativus L. HOM05D003635 ORTHO05D004283 5.0e-202 708.0 592 64.4
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 6.5e-202 707.6 584 65.1
MELO3C023823.2 Cucumis melo HOM05D003635 ORTHO05D004283 6.5e-202 707.6 592 64.4
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 6.5e-202 707.6 592 64.2
HPP92_016710 Vanilla planifolia HOM05D003635 ORTHO05D004283 6.5e-202 707.6 588 64.8
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 1.5e-201 706.4 592 64.5
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 1.5e-201 706.4 590 63.7
HPP92_027161 Vanilla planifolia HOM05D003635 ORTHO05D004283 1.5e-201 706.4 588 64.6
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 3.2e-201 705.3 590 63.6
arahy.Tifrunner.gnm1.ann1.4JT818 Arachis hypogaea HOM05D003635 ORTHO05D004283 4.2e-201 704.9 592 63.7
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 4.2e-201 704.9 586 63.8
VMungo0720G0614 Vigna mungo HOM05D003635 ORTHO05D004283 5.5e-201 704.5 592 63.9
Aqoxy2G04103 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 9.4e-201 703.7 586 63.3
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 9.4e-201 703.7 592 64.7
AL5G36324 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 1.2e-200 703.4 586 63.8
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 1.2e-200 703.4 592 63.2
Sed0026990 Sechium edule HOM05D003635 ORTHO05D004283 2.1e-200 702.6 592 64.4
Aqoxy1G01641 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 2.7e-200 702.2 586 63.3
CANSAT56G1536 Cannabis sativa HOM05D003635 ORTHO05D004283 2.7e-200 702.2 592 64.2
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 3.6e-200 701.8 586 63.8
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 3.6e-200 701.8 592 64.0
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 1.0e-199 700.3 589 63.7
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 1.4e-199 699.9 590 63.2
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 1.8e-199 699.5 586 63.3
AT3G55200 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 2.3e-199 699.1 586 63.3
AT3G55220 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 2.3e-199 699.1 586 63.3
Hma1.2p1_3477F.1_g336300 Hydrangea macrophylla HOM05D003635 ORTHO05D004283 2.3e-199 699.1 463 76.0
unitig_736.g22269 Utricularia gibba HOM05D003635 ORTHO05D004283 2.3e-199 699.1 590 63.4
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 3.0e-199 698.7 586 63.0
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 5.2e-199 698.0 592 63.5
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 8.8e-199 697.2 590 63.2
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 1.1e-198 696.8 586 63.1
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 2.6e-198 695.7 591 63.1
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 2.6e-198 695.7 590 62.9
TWI63G0503 Tripterygium wilfordii HOM05D003635 ORTHO05D004283 3.3e-198 695.3 592 63.0
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 5.7e-198 694.5 586 62.6
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 5.7e-198 694.5 590 63.1
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 7.4e-198 694.1 586 62.5
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 7.4e-198 694.1 586 62.5
FAN23G1337 Fragaria x ananassa HOM05D003635 ORTHO05D004283 9.7e-198 693.7 590 63.2
FAN23G3063 Fragaria x ananassa HOM05D003635 ORTHO05D004283 9.7e-198 693.7 590 63.2
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 1.3e-197 693.3 586 62.8
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 1.7e-197 693.0 592 63.3
FAN19G1456 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.7e-197 693.0 592 63.3
FAN28G1205 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.7e-197 691.8 592 63.2
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 4.8e-197 691.4 592 62.5
RcHm_v2.0_Chr3g0492631 Rosa chinensis HOM05D003635 ORTHO05D004283 8.2e-197 690.6 592 63.3
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 1.1e-196 690.3 591 62.6
ATR0820G062 Amborella trichopoda HOM05D003635 ORTHO05D004283 1.4e-196 689.9 586 62.6
FAN26G2866 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.4e-196 689.9 592 63.0
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 7.0e-196 687.6 592 62.0
PGR142G3382 Punica granatum HOM05D003635 ORTHO05D004283 7.0e-196 687.6 592 63.5
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 4.5e-195 684.9 584 62.8
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 1.0e-194 683.7 584 62.5
Medtr4g115500 Medicago truncatula HOM05D003635 ORTHO05D004283 1.5e-193 679.9 592 61.8
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 2.1e-192 676.0 596 61.6
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 5.2e-191 671.4 596 61.7
arahy.Tifrunner.gnm1.ann1.T81D7J Arachis hypogaea HOM05D003635 ORTHO05D004283 1.5e-190 669.8 631 58.5
Gohir.D04G061100 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.5e-190 669.8 428 78.5
Medtr4g115810 Medicago truncatula HOM05D003635 ORTHO05D004283 1.5e-190 669.8 586 61.4
SEGI_11055 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 2.6e-190 669.1 584 60.3
EL10Ac2g03470 Beta vulgaris HOM05D003635 ORTHO05D004283 5.7e-190 667.9 590 62.7
Dinv31402 Davidia involucrata HOM05D003635 ORTHO05D004283 2.8e-189 665.6 463 73.9
AUR62022537 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.7e-189 665.2 590 62.5
Ah.09g234270 Amaranthus hybridus HOM05D003635 ORTHO05D004283 1.8e-188 662.9 590 62.4
Os02g0137400 Oryza sativa ssp. japonica HOM05D003635 ORTHO05D004283 5.4e-188 661.4 588 60.4
Zm00001eb231820 Zea mays HOM05D003635 ORTHO05D004283 2.7e-187 659.1 587 59.5
Solyc04g010260.3 Solanum lycopersicum HOM05D003635 ORTHO05D004283 2.2e-186 656.0 463 71.7
FAN03G1481 Fragaria x ananassa HOM05D003635 ORTHO05D004283 2.4e-180 636.0 631 56.7
Hund19994 Selenicereus undatus HOM05D003635 ORTHO05D004283 2.0e-179 632.9 590 60.0
AUR62035965 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.8e-178 628.6 590 60.3
Pp3c4_5190 Physcomitrium patens HOM05D003635 ORTHO05D004283 5.0e-178 628.2 585 57.4
Mapoly0009s0019 Marchantia polymorpha HOM05D003635 ORTHO05D004283 8.6e-178 627.5 586 57.0
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 8.6e-178 627.5 592 58.4
FvH4_7g20980 Fragaria vesca HOM05D003635 ORTHO05D004283 1.1e-177 627.1 631 56.1
FAN06G2419 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.9e-177 626.3 631 56.1
FAN10G2700 Fragaria x ananassa HOM05D003635 ORTHO05D004283 2.5e-177 625.9 610 57.0
FAN06G4735 Fragaria x ananassa HOM05D003635 ORTHO05D004283 4.7e-176 621.7 631 55.6
Pp3c12_11240 Physcomitrium patens HOM05D003635 ORTHO05D004283 6.8e-175 617.8 590 56.3
Pp3c16_16800 Physcomitrium patens HOM05D003635 ORTHO05D004283 4.4e-174 615.1 585 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1182 Anthoceros agrestis HOM05D003635 ORTHO05D004283 5.7e-174 614.8 584 56.5
Psat6g237600 Pisum sativum HOM05D003635 ORTHO05D004283 1.7e-173 613.2 460 69.1
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 3.7e-173 612.1 584 57.2
GSVIVG01005970001 Vitis vinifera HOM05D003635 ORTHO05D004283 1.5e-169 600.1 547 60.9
TPR.G13999 Trifolium pratense HOM05D003635 ORTHO05D004283 2.9e-165 585.9 457 66.5
AL5G36340 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 4.1e-164 582.0 446 66.6
Medtr6g013290 Medicago truncatula HOM05D003635 ORTHO05D004283 4.3e-161 572.0 588 55.8
AUR62023868 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.2e-156 555.8 585 54.9
Cc00_g29200 Coffea canephora HOM05D003635 ORTHO05D004283 3.4e-150 535.8 382 72.0
CDE09G0269 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 5.8e-150 535.0 586 52.7
Actinidia29205 Actinidia chinensis HOM05D003635 ORTHO05D004283 1.4e-143 513.8 463 63.3
CBR_g32401 Chara braunii HOM05D003635 ORTHO05D004283 7.6e-134 481.5 798 38.7
AagrBONN_evm.TU.Sc2ySwM_362.982 Anthoceros agrestis HOM05D003635 ORTHO05D004283 2.3e-122 443.4 460 52.2
Actinidia02986 Actinidia chinensis HOM05D003635 ORTHO05D004283 3.7e-120 436.0 468 54.1
CDE02G2560 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 2.6e-102 376.7 314 63.7
MCO14G333 Micromonas commoda HOM05D003635 ORTHO05D004283 3.8e-101 372.9 589 37.5
Psat5g199040 Pisum sativum HOM05D003635 ORTHO05D004283 1.2e-99 367.9 432 50.0
PRCOL_00000086 Prasinoderma coloniale HOM05D003635 ORTHO05D004283 2.6e-94 350.1 585 37.9
Cre08.g372800 Chlamydomonas reinhardtii HOM05D003635 ORTHO05D004283 1.1e-92 344.7 593 35.8
MD07G1189000 Malus domestica HOM05D003635 ORTHO05D004283 1.6e-91 340.9 290 64.5
AUR62044277 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.1e-79 300.1 238 66.0
Actinidia13851 Actinidia chinensis HOM05D003635 ORTHO05D004283 4.0e-74 283.1 326 52.1
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 6.4e-56 222.6 462 31.4
FAN10G2922 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.6e-54 218.0 270 50.4
AUR62002316 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.4e-49 200.3 484 35.3
HanXRQChr08g0234761 Helianthus annuus HOM05D003635 ORTHO05D004283 3.3e-44 183.7 176 60.8
Psat7g159960 Pisum sativum HOM05D003635 ORTHO05D004283 3.6e-43 180.3 103 84.5
AUR62002616 Chenopodium quinoa HOM05D003635 ORTHO05D004283 4.7e-43 179.9 435 34.7
HanXRQChr08g0234771 Helianthus annuus HOM05D003635 ORTHO05D004283 6.6e-29 132.9 71 83.1
ECA233G4736 Erigeron canadensis HOM05D003635 ORTHO05D004283 5.6e-28 129.8 89 69.7
Carub.0005s2186 Capsella rubella HOM05D003635 ORTHO05D004283 1.4e-26 125.2 166 45.8
Cc00_g13950 Coffea canephora HOM05D003635 ORTHO05D004283 2.4e-26 124.4 172 44.8
CDE02G0853 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 1.9e-23 114.8 163 43.6
A09p07400 Brassica napus HOM05D003635 ORTHO05D004283 3.0e-21 107.5 95 58.9
Psat7g159880 Pisum sativum HOM05D003635 ORTHO05D004283 5.1e-21 106.7 165 41.2
Sabra08G0035000 Salix brachista HOM05D003635 ORTHO05D004283 1.9e-20 104.8 70 78.6
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.1e-18 99.0 55 83.6
RcHm_v2.0_Chr1g0365341 Rosa chinensis HOM05D003635 ORTHO05D004283 6.0e-14 83.2 59 72.9
MD07G1188800 Malus domestica HOM05D003635 ORTHO05D004283 1.3e-13 82.0 47 87.2
EL10Ac3g06633 Beta vulgaris HOM05D003635 ORTHO05D004283 8.7e-13 79.3 45 80.0
CARHR289050 Cardamine hirsuta HOM05D003635 ORTHO05D021615 1.9e-12 78.2 41 87.8
TPR.G14006 Trifolium pratense HOM05D003635 ORTHO05D004283 3.3e-12 77.4 51 78.4
Psat1g081240 Pisum sativum HOM05D000684 ORTHO05D006827 5.6e-12 76.6 40 87.5
SEGI_11921 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 1.3e-11 75.5 60 65.0
FAN01G1516 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.1e-10 72.4 47 76.6
FAN10G0554 Fragaria x ananassa HOM05D003635 ORTHO05D002227 1.1e-10 72.4 47 76.6
AUR62039159 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.8e-08 63.9 42 69.0
Zm00001eb128630 Zea mays HOM05D003635 ORTHO05D004283 9.3e-07 59.3 31 80.6
QL07p044690 Quercus lobata HOM05D003609 ORTHO05D004185 1.2e-06 58.9 198 29.3
BcaC04g23440 Brassica carinata HOM05D003635 ORTHO05D021615 6.0e-06 56.6 32 81.2
C09p08310 Brassica napus HOM05D003635 ORTHO05D021615 6.0e-06 56.6 32 81.2
BolC9t53741H Brassica oleracea HOM05D003635 ORTHO05D021615 6.0e-06 56.6 32 81.2
Zm00001eb014440 Zea mays HOM05D002023 ORTHO05D010966 7.9e-06 56.2 31 74.2
Zm00001eb335840 Zea mays HOM05D002023 ORTHO05D010966 7.9e-06 56.2 31 74.2


User provided reference genes

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