Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 0.0e+00 2660.6 1341 100.0
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 0.0e+00 1849.7 1366 69.4
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1731.8 1217 73.6
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 0.0e+00 1691.4 1180 73.2
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 0.0e+00 1650.6 1366 62.4
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 0.0e+00 1647.5 1366 62.1
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 0.0e+00 1606.7 1364 60.0
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 0.0e+00 1579.7 1449 57.6
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 0.0e+00 1546.2 1362 59.7
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 0.0e+00 1536.2 1367 58.5
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 0.0e+00 1523.8 1362 57.6
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 0.0e+00 1508.8 1367 58.1
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 0.0e+00 1506.9 1361 59.1
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 0.0e+00 1504.2 1359 57.5
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 0.0e+00 1474.9 1363 57.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 0.0e+00 1467.6 1360 56.9
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 0.0e+00 1461.8 1364 55.9
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1459.5 1365 57.2
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 0.0e+00 1457.2 1363 57.2
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 0.0e+00 1452.2 1377 57.4
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 0.0e+00 1449.1 1366 55.1
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 0.0e+00 1442.9 1365 57.0
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 0.0e+00 1442.6 1363 56.7
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 0.0e+00 1441.4 1370 57.2
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 0.0e+00 1424.5 1367 54.4
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 0.0e+00 1414.1 1363 54.7
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 0.0e+00 1409.4 1362 55.5
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1406.7 1371 55.1
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 0.0e+00 1403.7 1374 55.2
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1399.0 1372 55.3
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 0.0e+00 1391.7 1378 54.1
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 0.0e+00 1384.4 1345 55.2
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 0.0e+00 1379.0 1364 53.4
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 0.0e+00 1379.0 1367 54.3
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 0.0e+00 1373.2 1360 54.6
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 0.0e+00 1371.7 1365 53.8
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 0.0e+00 1365.9 1299 55.8
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 0.0e+00 1365.1 1360 54.6
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 0.0e+00 1364.4 1364 53.5
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 0.0e+00 1360.5 1364 53.4
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 0.0e+00 1359.4 1379 53.4
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 0.0e+00 1358.6 1348 54.3
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 0.0e+00 1349.3 1364 53.0
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 0.0e+00 1347.8 1306 55.9
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 0.0e+00 1332.4 1368 52.4
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 0.0e+00 1328.9 871 80.3
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 0.0e+00 1327.8 1363 52.7
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 0.0e+00 1322.0 1364 52.3
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 0.0e+00 1304.7 1373 51.9
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 0.0e+00 1298.1 1375 51.8
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 0.0e+00 1292.7 1400 50.7
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 0.0e+00 1285.0 1472 54.8
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 0.0e+00 1281.2 1362 53.1
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 0.0e+00 1268.1 1371 50.3
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 0.0e+00 1251.9 1465 47.8
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 0.0e+00 1247.3 1361 51.4
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 0.0e+00 1242.3 1363 50.6
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 0.0e+00 1220.3 1373 50.4
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 0.0e+00 1220.3 1381 49.0
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 0.0e+00 1196.8 1393 48.7
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 0.0e+00 1192.9 1360 48.8
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 0.0e+00 1192.9 1360 48.8
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 0.0e+00 1188.3 1356 49.2
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 0.0e+00 1165.2 1358 47.9
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 0.0e+00 1164.8 1357 47.9
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 0.0e+00 1164.1 1340 49.0
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 0.0e+00 1146.3 1358 48.2
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 0.0e+00 1138.3 1287 50.3
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 1.8e-273 946.8 883 58.1
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 1.5e-267 927.2 1366 39.8
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 1.2e-256 891.0 1373 37.6
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 5.8e-256 888.6 1308 40.7
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 7.8e-245 851.7 900 52.6
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 1.9e-243 847.0 1047 46.6
vmacro19389 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 5.6e-243 845.5 490 86.7
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 7.3e-243 845.1 1054 47.2
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 2.4e-241 840.1 682 63.3
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.1e-234 817.0 770 55.5
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 3.6e-234 816.2 879 50.5
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.5e-208 731.1 773 52.8
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 8.7e-204 715.3 630 59.7
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 1.9e-203 714.1 653 56.0
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.4e-201 707.2 1004 42.5
CAN.G1305.20 Capsicum annuum HOM05D001734 ORTHO05D003483 4.8e-186 656.4 587 59.1
TPR.G6035 Trifolium pratense HOM05D001734 ORTHO05D003483 2.5e-182 644.0 806 46.7
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 3.1e-177 627.1 1404 31.4
FAN05G0227 Fragaria x ananassa HOM05D001734 ORTHO05D003483 7.0e-169 599.4 560 55.7
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 1.5e-163 581.6 1418 29.7
Ca_16175_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.8e-161 574.7 461 62.7
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 1.2e-157 562.0 514 59.3
Lj9A448T39 Lonicera japonica HOM05D001734 ORTHO05D003483 2.1e-157 561.2 428 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 6.4e-154 549.7 1406 30.6
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 3.0e-151 540.8 774 42.4
VMungo1309G1926 Vigna mungo HOM05D000002 ORTHO05D000001 2.3e-143 514.6 514 53.9
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 1.6e-141 508.4 630 43.8
PSO732G0258 Papaver somniferum HOM05D001734 ORTHO05D003483 2.1e-141 508.1 388 63.9
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 3.1e-140 504.2 630 44.1
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 6.2e-133 479.9 643 44.0
Hund02745 Selenicereus undatus HOM05D001734 ORTHO05D003483 2.6e-131 474.6 357 67.2
Cpa.g.sc1166.1 Carica papaya HOM05D001734 ORTHO05D003483 1.3e-130 472.2 370 65.1
TPR.G6095 Trifolium pratense HOM05D001734 ORTHO05D003483 3.7e-130 470.7 421 57.2
Lalb_Chr08g0236521 Lupinus albus HOM05D001734 ORTHO05D003483 7.8e-128 463.0 391 61.4
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 1.5e-123 448.7 1044 33.4
Rhsim06G0125200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.6e-115 421.4 256 82.4
ATR0730G017 Amborella trichopoda HOM05D001734 ORTHO05D003483 1.4e-113 415.6 461 47.5
Migut.C00312 Erythranthe guttata HOM05D001734 ORTHO05D003483 6.2e-109 400.2 351 59.0
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.8e-108 398.7 421 50.1
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 6.7e-103 380.2 497 46.1
Nitab4.5_0000984g0080 Nicotiana tabacum HOM05D001734 ORTHO05D003483 4.0e-100 370.9 327 59.9
CDE07G0247 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 2.4e-92 345.1 283 57.2
Rhsim02G0151200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.3e-87 328.6 247 69.2
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 1.0e-79 303.1 935 27.8
SEGI_17988 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 7.2e-73 280.4 350 41.7
SHI17017 Sapria himalayana HOM05D001734 ORTHO05D003483 7.4e-70 270.4 234 59.4
COL.COLO4_30229 Corchorus olitorius HOM05D001734 ORTHO05D003483 4.2e-57 228.0 380 40.0
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 6.1e-56 224.2 178 63.5
Cpa.g.sc76.49 Carica papaya HOM05D001734 ORTHO05D003483 1.5e-54 219.5 292 45.5
QL01p024072 Quercus lobata HOM05D001734 ORTHO05D020518 6.3e-53 214.2 719 27.4
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 8.3e-53 213.8 143 69.2
Rhsim02G0102600 Rhododendron simsii HOM05D001734 ORTHO05D003483 3.5e-51 208.4 256 48.8
CBR_g290 Chara braunii HOM05D001734 ORTHO05D003483 6.5e-50 204.1 345 32.8
Rhsim06G0125100 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.0e-46 192.6 117 88.9
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 3.8e-42 178.3 148 55.4
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 4.7e-40 171.4 147 53.1
SEGI_22749 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 8.0e-40 170.6 164 50.0
arahy.Tifrunner.gnm1.ann1.1I6Y5K Arachis hypogaea HOM05D001734 ORTHO05D003483 4.6e-35 154.8 103 64.1
arahy.Tifrunner.gnm1.ann1.BK2P93 Arachis hypogaea HOM05D001734 ORTHO05D003483 4.6e-35 154.8 192 44.8
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.3e-34 153.3 126 55.6
arahy.Tifrunner.gnm1.ann1.EMU6Q2 Arachis hypogaea HOM05D001734 ORTHO05D003483 9.2e-28 130.6 116 53.4
CBR_g286 Chara braunii HOM05D000004 ORTHO05D000002 9.2e-28 130.6 248 35.1
Psat5g114800 Pisum sativum HOM05D001734 ORTHO05D003483 2.3e-26 125.9 97 62.9
SHI17018 Sapria himalayana HOM05D000105 ORTHO05D000023 3.9e-26 125.2 168 44.0
TPR.G5903 Trifolium pratense HOM05D001734 ORTHO05D003483 1.9e-25 122.9 91 65.9
SHI17002 Sapria himalayana HOM05D001734 ORTHO05D003483 4.3e-25 121.7 109 53.2
SHI17004 Sapria himalayana HOM05D001734 ORTHO05D020992 4.3e-25 121.7 109 53.2
TPR.G29227 Trifolium pratense HOM05D001734 ORTHO05D003483 8.1e-24 117.5 112 53.6
CAN.G853.42 Capsicum annuum HOM05D001734 ORTHO05D003483 2.3e-23 115.9 92 60.9
QL07p004594 Quercus lobata HOM05D001734 ORTHO05D020518 2.6e-22 112.5 124 52.4
Ca_05696_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 5.8e-22 111.3 185 38.9
MD14G1180200 Malus domestica HOM05D001734 ORTHO05D003483 1.9e-20 106.3 95 57.9
TPR.G21158 Trifolium pratense HOM05D001734 ORTHO05D003483 2.3e-18 99.4 73 61.6
SHI17003 Sapria himalayana HOM05D001734 ORTHO05D003483 6.6e-18 97.8 89 60.7
Lalb_Chr08g0236511 Lupinus albus HOM05D001734 ORTHO05D003483 1.5e-17 96.7 81 59.3
SHI17005 Sapria himalayana HOM05D001734 ORTHO05D003483 1.2e-16 93.6 231 29.9
QL07p004610 Quercus lobata HOM05D001734 ORTHO05D020518 2.8e-16 92.4 119 49.6
SHI17006 Sapria himalayana HOM05D001734 ORTHO05D020518 6.2e-16 91.3 141 39.7
SEGI_06250 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.1e-15 90.5 99 45.5
Sopen12g024730 Solanum pennellii HOM05D035692 ORTHO05D020992 3.4e-14 85.5 75 56.0
QL07p004626 Quercus lobata HOM05D001734 ORTHO05D003483 2.4e-12 79.3 64 68.8
TPR.G5917 Trifolium pratense HOM05D001734 ORTHO05D003483 3.2e-12 79.0 62 58.1
CSS0037969 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 1.9e-09 69.7 42 76.2
PRCOL_00001369 Prasinoderma coloniale HOM05D001734 ORTHO05D003483 1.6e-08 66.6 208 25.5
Solyc07g150133.1 Solanum lycopersicum HOM05D001734 ORTHO05D020992 2.8e-08 65.9 55 52.7
Lsat_1_v5_gn_6_39261 Lactuca sativa HOM05D001734 ORTHO05D020518 1.4e-07 63.5 54 59.3
QL01p024955 Quercus lobata HOM05D001734 ORTHO05D020518 6.9e-07 61.2 61 55.7
SEGI_10258 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.5e-06 60.1 274 26.3
Lsat_1_v5_gn_4_160500 Lactuca sativa HOM05D005948 ORTHO05D007689 3.4e-06 58.9 42 71.4


User provided reference genes

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