Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.6e-295 1016.5 553 100.0
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.8e-107 394.0 303 79.5
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 3.5e-82 310.1 303 70.0
Rhsim03G0129100 Rhododendron simsii HOM05D007209 ORTHO05D000921 1.5e-69 268.1 153 90.8
Rhsim12G0067000 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.1e-62 245.4 152 81.6
Rhsim01G0206100 Rhododendron simsii HOM05D007209 ORTHO05D000921 1.1e-51 208.8 179 66.5
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.1e-49 199.9 351 50.7
Rhsim03G0151700 Rhododendron simsii HOM05D000114 ORTHO05D000037 6.6e-49 199.5 152 69.1
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 6.9e-46 189.5 354 47.2
Rhsim08G0112700 Rhododendron simsii HOM05D007209 ORTHO05D000921 2.5e-40 171.0 98 89.8
vmacro18043 Vaccinium macrocarpon HOM05D007209 ORTHO05D000005 2.4e-38 164.5 114 73.7
Rhsim01G0206000 Rhododendron simsii HOM05D007209 ORTHO05D000921 2.5e-35 154.5 89 87.6
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 2.1e-34 151.4 195 49.2
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 1.4e-30 138.7 346 38.4
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 4.1e-30 137.1 136 56.6
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 6.9e-30 136.3 262 42.0
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 9.0e-30 136.0 299 39.1
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 1.2e-29 135.6 275 41.1
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 2.6e-29 134.4 191 46.6
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 5.0e-28 130.2 182 45.6
Rhsim04G0209100 Rhododendron simsii HOM05D000007 ORTHO05D023101 4.2e-27 127.1 72 84.7
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.2e-26 125.6 189 44.4
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.2e-26 125.6 189 44.4
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.2e-26 125.6 189 44.4
Rhsim04G0208900 Rhododendron simsii HOM05D000007 ORTHO05D023101 1.2e-26 125.6 72 83.3
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 6.1e-26 123.2 184 43.5
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.3e-25 121.3 219 39.3
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 4.3e-24 117.1 221 38.5
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.7e-24 116.7 122 57.4
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 1.6e-23 115.2 195 43.6
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 2.8e-23 114.4 192 42.7
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 3.7e-23 114.0 322 36.0
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 3.7e-23 114.0 193 39.4
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 4.8e-23 113.6 170 42.9
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 4.8e-23 113.6 283 34.3
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 1.4e-22 112.1 180 42.8
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 2.4e-22 111.3 183 42.1
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.4e-22 111.3 183 42.1
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 6.9e-22 109.8 178 43.8
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 6.9e-22 109.8 182 40.7
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 2.0e-21 108.2 174 43.1
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 4.5e-21 107.1 171 43.3
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 7.7e-21 106.3 173 42.2
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.0e-20 105.9 169 40.2
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.7e-20 105.1 169 40.8
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 2.9e-20 104.4 352 36.6
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 3.8e-20 104.0 313 34.5
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 3.8e-20 104.0 262 35.5
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 5.0e-20 103.6 185 37.8
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 6.5e-20 103.2 188 39.9
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.1e-19 102.4 222 38.3
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 1.4e-19 102.1 190 40.5
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 1.4e-19 102.1 182 39.6
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 1.9e-19 101.7 315 35.2
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.5e-19 101.3 185 37.8
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 3.2e-19 100.9 348 32.8
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 7.2e-19 99.8 182 39.6
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 7.2e-19 99.8 168 44.0
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 7.2e-19 99.8 339 27.1
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 7.2e-19 99.8 181 39.8
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 9.4e-19 99.4 358 33.5
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 1.2e-18 99.0 168 39.9
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 2.1e-18 98.2 350 36.9
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 6.1e-18 96.7 252 33.7
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 7.9e-18 96.3 224 33.9
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.4e-17 95.5 239 33.1
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 2.3e-17 94.7 304 34.2
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 3.0e-17 94.4 321 39.3
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 3.9e-17 94.0 292 36.3
vmacro08255 Vaccinium macrocarpon HOM05D000007 ORTHO05D023101 3.9e-17 94.0 77 63.6
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 1.1e-16 92.4 197 37.1
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.1e-16 92.4 260 34.2
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.5e-16 92.0 232 35.8
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 1.5e-16 92.0 258 32.9
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 2.6e-16 91.3 162 38.9
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 5.7e-16 90.1 280 32.1
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 7.4e-16 89.7 352 35.8
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.7e-15 88.6 347 35.4
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 1.7e-15 88.6 230 33.9
Rhsim04G0134000 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.7e-15 88.6 170 36.5
Actinidia24178 Actinidia chinensis HOM05D013777 ORTHO05D000921 2.2e-15 88.2 164 36.0
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 4.8e-15 87.0 283 32.9
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 6.3e-15 86.7 178 35.4
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 6.3e-15 86.7 348 31.6
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 8.2e-15 86.3 263 31.9
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 1.1e-14 85.9 230 32.6
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 1.8e-14 85.1 227 33.5
Rhsim12G0122900 Rhododendron simsii HOM05D000034 ORTHO05D000037 1.8e-14 85.1 170 36.5
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 9.1e-14 82.8 180 31.1
Rhsim04G0210000 Rhododendron simsii HOM05D000007 ORTHO05D023101 1.2e-13 82.4 86 54.7
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 2.6e-13 81.3 256 34.4
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 4.5e-13 80.5 219 37.0
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.3e-12 79.0 178 36.0
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 1.7e-12 78.6 168 36.9
ClCG03G008640 Citrullus lanatus HOM05D007209 ORTHO05D000921 2.9e-12 77.8 140 34.3
Dinv01169 Davidia involucrata HOM05D007209 ORTHO05D000921 5.0e-12 77.0 159 31.4
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 6.5e-12 76.6 199 36.2
ClCG07G007780 Citrullus lanatus HOM05D007209 ORTHO05D000921 8.5e-12 76.3 146 33.6
Dinv05467 Davidia involucrata HOM05D007209 ORTHO05D000921 1.9e-11 75.1 159 30.2
Actinidia05403 Actinidia chinensis HOM05D013777 ORTHO05D000921 2.5e-11 74.7 164 33.5
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 2.5e-11 74.7 194 35.6
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 2.5e-11 74.7 223 34.5
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 2.5e-11 74.7 236 30.5
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 3.2e-11 74.3 192 36.5
ClCG03G011480 Citrullus lanatus HOM05D007209 ORTHO05D000921 3.2e-11 74.3 122 36.1
MELO3C030897.2 Cucumis melo HOM05D007209 ORTHO05D000921 3.2e-11 74.3 154 35.1
Rhsim04G0210200 Rhododendron simsii HOM05D000007 ORTHO05D023101 5.5e-11 73.6 82 51.2
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 9.4e-11 72.8 232 32.3
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 1.2e-10 72.4 166 35.5
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 1.2e-10 72.4 257 30.4
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 2.7e-10 71.2 265 32.8
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 2.7e-10 71.2 265 32.8
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 7.9e-10 69.7 262 27.5
Dinv20825 Davidia involucrata HOM05D007209 ORTHO05D000921 3.9e-09 67.4 164 29.3
MELO3C035609.2 Cucumis melo HOM05D007209 ORTHO05D000921 5.2e-09 67.0 112 33.0
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 5.2e-09 67.0 148 35.8
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 6.7e-09 66.6 323 34.4
Dinv27628 Davidia involucrata HOM05D007209 ORTHO05D000921 6.7e-09 66.6 103 35.0
MELO3C029648.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.0e-08 65.1 151 30.5
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 2.0e-08 65.1 194 33.0
ClCG09G017130 Citrullus lanatus HOM05D007209 ORTHO05D000921 2.6e-08 64.7 104 38.5
MELO3C033912.2 Cucumis melo HOM05D007209 ORTHO05D000921 3.3e-08 64.3 104 36.5
MELO3C030714.2 Cucumis melo HOM05D007209 ORTHO05D000921 5.7e-08 63.5 97 38.1
MELO3C035563.2 Cucumis melo HOM05D007209 ORTHO05D000921 5.7e-08 63.5 108 35.2
Dinv32776 Davidia involucrata HOM05D007209 ORTHO05D000921 5.7e-08 63.5 166 28.9
Dinv44466 Davidia involucrata HOM05D000007 ORTHO05D000017 5.7e-08 63.5 65 50.8
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 7.4e-08 63.2 260 28.5
Sed0003641 Sechium edule HOM05D000034 ORTHO05D000037 7.4e-08 63.2 94 39.4
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 9.7e-08 62.8 205 34.6
CSS0009073 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.3e-07 62.4 165 30.9
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.7e-07 62.0 325 34.5
Dinv13268 Davidia involucrata HOM05D000097 ORTHO05D000041 1.7e-07 62.0 113 31.9
Actinidia23315 Actinidia chinensis HOM05D013777 ORTHO05D000921 2.2e-07 61.6 164 28.7
Hma1.2p1_0805F.1_g221293 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 2.2e-07 61.6 161 28.6
Hma1.2p1_0805F.1_g221299 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 2.2e-07 61.6 161 28.6
MELO3C030185.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.8e-07 61.2 151 31.8
MELO3C031338.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.8e-07 61.2 150 29.3
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 3.7e-07 60.8 126 29.4
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 3.7e-07 60.8 126 29.4
MELO3C034280.2 Cucumis melo HOM05D007209 ORTHO05D000921 4.8e-07 60.5 152 31.6
Rhsim04G0210400 Rhododendron simsii HOM05D008700 ORTHO05D010645 4.8e-07 60.5 85 43.5
TAR080G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 4.8e-07 60.5 127 29.9
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 6.3e-07 60.1 63 50.8
Dinv23928 Davidia involucrata HOM05D007209 ORTHO05D000921 6.3e-07 60.1 102 30.4
TAR599G0002 Trochodendron aralioides HOM05D007209 ORTHO05D000921 6.3e-07 60.1 151 29.1
Hma1.2p1_0309F.1_g120595 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 8.2e-07 59.7 161 28.6
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 8.2e-07 59.7 72 50.0
Sed0011521 Sechium edule HOM05D007209 ORTHO05D000921 8.2e-07 59.7 161 28.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 1.1e-06 59.3 217 32.3
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 1.1e-06 59.3 206 30.6
ClCG10G015090 Citrullus lanatus HOM05D007209 ORTHO05D000921 1.4e-06 58.9 156 30.8
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 5.3e-06 57.0 217 31.8
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 5.3e-06 57.0 217 31.8
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.1e-06 56.2 32 81.2


User provided reference genes

Program Settings