Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 0.0e+00 1449.9 840 100.0
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 2.9e-266 922.2 838 60.7
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.6e-251 873.2 837 58.5
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 9.6e-241 837.4 843 56.0
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.0e-234 817.4 840 55.1
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 6.4e-229 798.1 842 54.3
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 2.4e-220 769.6 840 53.2
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 9.6e-217 757.7 836 53.1
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 5.3e-215 751.9 843 52.2
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 2.0e-214 750.0 836 52.8
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.2e-211 740.7 842 51.8
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.3e-210 737.3 840 50.2
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 1.3e-210 737.3 840 50.8
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 2.3e-210 736.5 870 50.3
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.1e-209 734.2 823 52.6
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 3.7e-208 729.2 842 51.0
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 7.6e-206 721.5 840 50.2
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 1.3e-205 720.7 840 50.1
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 3.8e-205 719.2 840 51.3
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.7e-203 713.0 835 49.7
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 6.7e-202 708.4 843 50.9
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.3e-200 704.1 834 50.5
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 2.8e-200 703.0 837 48.7
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.1e-199 701.0 843 50.7
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.4e-199 700.7 842 49.3
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 4.1e-199 699.1 855 48.0
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.3e-199 698.7 840 49.8
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 1.5e-198 697.2 833 48.7
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 4.5e-198 695.7 834 50.4
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 8.5e-197 691.4 835 48.4
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 3.2e-196 689.5 839 50.8
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 5.5e-196 688.7 840 50.4
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 7.2e-196 688.3 840 48.1
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 2.7e-195 686.4 833 47.8
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.6e-195 685.6 840 50.1
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.1e-195 685.3 840 49.9
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.0e-194 682.9 839 50.3
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 3.9e-194 682.6 836 47.4
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 5.7e-193 678.7 838 48.1
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 7.4e-193 678.3 838 48.1
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 8.2e-192 674.9 848 49.8
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.2e-190 671.0 833 47.7
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.7e-189 667.2 845 46.9
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.7e-189 667.2 843 47.1
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 8.5e-189 664.8 824 48.1
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 6.5e-181 638.6 770 49.1
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 6.5e-181 638.6 841 47.1
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.5e-180 637.5 836 46.2
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 3.6e-179 632.9 910 43.7
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 4.7e-179 632.5 863 45.4
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 2.3e-178 630.2 843 45.4
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.1e-177 627.9 843 45.4
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 7.5e-177 625.2 840 45.2
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 9.7e-177 624.8 805 47.0
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 9.7e-177 624.8 843 45.1
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.0e-174 617.1 850 44.0
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.7e-174 616.7 840 46.7
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 4.5e-174 615.9 843 44.5
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 3.8e-173 612.8 843 44.2
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.1e-172 611.3 783 47.6
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.9e-172 610.5 843 44.0
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 3.6e-171 606.3 842 45.1
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 3.0e-170 603.2 843 43.9
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 3.0e-170 603.2 843 43.9
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 3.0e-170 603.2 843 43.9
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 5.7e-169 599.0 843 44.0
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 3.1e-167 593.2 845 44.1
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 2.0e-166 590.5 767 46.7
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 2.7e-166 590.1 840 43.2
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 7.7e-166 588.6 760 47.8
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.6e-163 580.9 852 44.1
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.1e-163 580.5 836 42.3
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.7e-160 570.9 460 72.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 6.6e-157 558.9 767 46.2
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.7e-153 545.8 749 45.7
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 9.8e-153 545.0 840 41.8
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 3.7e-152 543.1 841 42.6
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 7.0e-151 538.9 763 45.3
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 2.3e-149 533.9 835 41.2
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.5e-148 531.2 837 41.5
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 2.1e-147 527.3 698 47.3
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 5.4e-143 512.7 842 41.4
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.3e-141 508.1 834 39.6
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 5.0e-141 506.1 839 39.0
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 3.3e-140 503.4 808 41.2
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 2.6e-137 493.8 837 39.7
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.0e-133 480.3 841 39.8
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.3e-132 475.7 835 38.1
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 6.6e-125 452.6 845 36.8
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-122 444.9 751 40.5
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.2e-121 441.8 663 41.8
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 6.4e-120 436.0 668 43.7
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.4e-119 434.1 669 41.4
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 9.6e-116 422.2 766 38.5
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 2.1e-107 394.4 846 33.5
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 7.6e-105 386.0 600 40.7
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.2e-95 354.0 830 34.2
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 3.2e-95 354.0 846 31.3
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 9.3e-95 352.4 849 32.6
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.3e-93 348.6 896 32.4
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.6e-91 341.7 715 35.2
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 2.1e-91 341.3 223 74.9
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 5.3e-90 336.7 224 75.9
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.3e-88 332.0 590 39.3
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 1.7e-88 331.6 844 29.5
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 6.5e-88 329.7 618 37.7
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 8.2e-75 286.2 263 61.6
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 3.1e-74 284.3 304 52.6
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.3e-69 268.1 959 26.0
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 5.3e-66 256.9 695 31.5
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.2e-65 255.8 170 75.3
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.0e-65 255.0 135 94.1
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 4.5e-65 253.8 493 37.1
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 1.9e-63 248.4 445 40.0
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.8e-61 241.9 146 83.6
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 1.2e-60 239.2 164 73.8
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-59 235.7 165 73.3
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.1e-58 230.7 170 67.6
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 8.0e-54 216.5 166 68.1
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-48 199.1 151 70.9
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.6e-46 192.2 176 55.1
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 8.8e-45 186.4 180 65.6
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.4e-44 184.5 146 66.4
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 2.2e-43 181.8 181 55.2
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.2e-41 176.0 144 63.2
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 7.8e-41 173.3 152 60.5
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 6.1e-38 163.7 160 55.6
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 8.3e-35 153.3 171 49.7
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 1.4e-34 152.5 121 62.8
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.9e-26 125.6 163 46.6
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 9.2e-26 123.2 144 48.6
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 4.6e-25 120.9 804 23.8
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.0e-24 119.8 347 28.0
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 2.3e-24 118.6 96 64.6
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.1e-21 109.8 102 62.7
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 1.1e-21 109.8 149 45.6
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 4.4e-20 104.4 217 32.7
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.1e-18 99.8 210 32.9
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 4.6e-17 94.4 58 75.9
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 2.5e-15 88.6 52 80.8
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 7.3e-15 87.0 52 76.9
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 2.8e-14 85.1 92 50.0
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 1.7e-11 75.9 71 52.1
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 2.9e-11 75.1 62 59.7
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 1.7e-08 65.9 108 41.7
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 2.3e-08 65.5 108 41.7
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 8.7e-08 63.5 219 28.3
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.2e-06 59.7 70 45.7


User provided reference genes

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