Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0106900 Rhododendron simsii HOM05D003264 ORTHO05D003276 7.6e-71 271.2 235 100.0
vmacro19930 Vaccinium macrocarpon HOM05D003264 ORTHO05D003276 3.6e-28 129.4 160 87.5
Zm00001eb327870 Zea mays HOM05D003264 ORTHO05D003276 9.2e-16 88.2 51 80.4
Cc02_g21570 Coffea canephora HOM05D003264 ORTHO05D003276 1.2e-15 87.8 57 71.9
CSS0024435 Camellia sinensis var. sinensis HOM05D003264 ORTHO05D003276 1.6e-15 87.4 152 77.6
Dinv24193 Davidia involucrata HOM05D003264 ORTHO05D003276 2.0e-15 87.0 57 71.9
Ciclev10029102m.g Citrus clementina HOM05D003264 ORTHO05D003276 1.3e-14 84.3 57 73.7
HPP92_027250 Vanilla planifolia HOM05D003264 ORTHO05D003276 1.3e-14 84.3 57 71.9
Manes.06G012550 Manihot esculenta HOM05D003264 ORTHO05D003276 2.3e-14 83.6 57 73.7
PGSC0003DMG401012560 Solanum tuberosum HOM05D003264 ORTHO05D003276 3.0e-14 83.2 55 70.9
Solyc01g105140.3 Solanum lycopersicum HOM05D003264 ORTHO05D003276 3.9e-14 82.8 55 70.9
Sopen01g047670 Solanum pennellii HOM05D003264 ORTHO05D003276 3.9e-14 82.8 55 70.9
Nitab4.5_0009977g0010 Nicotiana tabacum HOM05D003264 ORTHO05D003276 5.0e-14 82.4 57 71.9
Peaxi162Scf00001g00126 Petunia axillaris HOM05D003264 ORTHO05D003276 6.6e-14 82.0 55 70.9
Peaxi162Scf00152g01021 Petunia axillaris HOM05D003264 ORTHO05D003276 2.5e-13 80.1 150 66.7
Prupe.7G083500 Prunus persica HOM05D003264 ORTHO05D003276 2.5e-13 80.1 57 68.4
QL11p020733 Quercus lobata HOM05D003264 ORTHO05D003276 2.5e-13 80.1 57 70.2
Nitab4.5_0000232g0340 Nicotiana tabacum HOM05D003264 ORTHO05D003276 5.6e-13 79.0 68 64.7
MD14G1052000 Malus domestica HOM05D003264 ORTHO05D003276 1.2e-12 77.8 52 69.2
GSVIVG01038734001 Vitis vinifera HOM05D003264 ORTHO05D003276 1.2e-12 77.8 151 45.7
Glyma.05G117600 Glycine max HOM05D003264 ORTHO05D003276 1.6e-12 77.4 57 71.9
Os07g0623300 Oryza sativa ssp. japonica HOM05D003264 ORTHO05D003276 1.6e-12 77.4 57 66.7
Lalb_Chr04g0256551 Lupinus albus HOM05D003264 ORTHO05D003276 2.8e-12 76.6 59 67.8
Lalb_Chr10g0097821 Lupinus albus HOM05D003264 ORTHO05D003276 3.6e-12 76.3 59 67.8
COL.COLO4_24953 Corchorus olitorius HOM05D003264 ORTHO05D003276 4.7e-12 75.9 54 70.4
Sc23g0000200 Simmondsia chinensis HOM05D003264 ORTHO05D003276 4.7e-12 75.9 149 55.7
Aqoxy5G01894 Aquilegia oxysepala HOM05D003264 ORTHO05D003276 6.2e-12 75.5 52 69.2
Lalb_Chr17g0340171 Lupinus albus HOM05D003264 ORTHO05D003276 6.2e-12 75.5 59 66.1
Glyma.08G072600 Glycine max HOM05D003264 ORTHO05D003276 8.0e-12 75.1 57 70.2
Nitab4.5_0002576g0030 Nicotiana tabacum HOM05D003264 ORTHO05D003276 1.4e-11 74.3 151 48.3
TAR625G1537 Trochodendron aralioides HOM05D003264 ORTHO05D003276 1.4e-11 74.3 152 71.7
arahy.Tifrunner.gnm1.ann1.KE9LK4 Arachis hypogaea HOM05D003264 ORTHO05D003276 1.8e-11 73.9 51 70.6
arahy.Tifrunner.gnm1.ann1.SG9G15 Arachis hypogaea HOM05D003264 ORTHO05D003276 1.8e-11 73.9 51 70.6
CiPaw.06G153100 Carya illinoinensis HOM05D003264 ORTHO05D003276 1.8e-11 73.9 52 73.1
SHI16513 Sapria himalayana HOM05D003264 ORTHO05D000001 1.8e-11 73.9 49 71.4
TPR.G10450 Trifolium pratense HOM05D003264 ORTHO05D003276 1.8e-11 73.9 58 69.0
ECA246G2989 Erigeron canadensis HOM05D003264 ORTHO05D003276 2.3e-11 73.6 54 66.7
Lj4g0021375 Lotus japonicus HOM05D003264 ORTHO05D003276 3.1e-11 73.2 57 63.2
Atru.chr5.2123 Acer truncatum HOM05D003264 ORTHO05D003276 4.0e-11 72.8 53 67.9
Duzib248G1348 Durio zibethinus HOM05D003264 ORTHO05D003276 5.2e-11 72.4 50 66.0
Sabra02G0075500 Salix brachista HOM05D003264 ORTHO05D003276 5.2e-11 72.4 59 61.0
DCAR_001787 Daucus carota HOM05D003264 ORTHO05D003276 8.9e-11 71.6 54 68.5
AUR62037336 Chenopodium quinoa HOM05D001923 ORTHO05D001903 1.2e-10 71.2 56 64.3
EL10Ac9g21475 Beta vulgaris HOM05D003264 ORTHO05D003276 1.5e-10 70.9 55 61.8
Haze_10693 Corylus avellana HOM05D003264 ORTHO05D003276 1.5e-10 70.9 150 50.7
Haze_10695 Corylus avellana HOM05D003264 ORTHO05D003276 1.5e-10 70.9 150 50.7
Medtr5g070450 Medicago truncatula HOM05D003264 ORTHO05D003276 1.5e-10 70.9 52 65.4
Medtr4g094235 Medicago truncatula HOM05D003264 ORTHO05D003276 2.0e-10 70.5 58 65.5
Sc18g0006910 Simmondsia chinensis HOM05D003264 ORTHO05D003276 3.4e-10 69.7 52 65.4
Zm00001eb018860 Zea mays HOM05D003264 ORTHO05D003276 7.5e-10 68.6 57 59.6
Peaxi162Scf00041g01416 Petunia axillaris HOM05D003264 ORTHO05D003276 9.8e-10 68.2 40 80.0
MBI05_g15582_MAGBIO Magnolia biondii HOM05D003264 ORTHO05D003276 1.3e-09 67.8 46 69.6
SGA_v2.0_scaffold104G30078 Striga asiatica HOM05D003264 ORTHO05D003276 1.3e-09 67.8 45 71.1
CiPaw.05G035800 Carya illinoinensis HOM05D003264 ORTHO05D003276 1.7e-09 67.4 46 73.9
Actinidia00266 Actinidia chinensis HOM05D003264 ORTHO05D003276 2.2e-09 67.0 38 84.2
Aa31LG3G17620 Aethionema arabicum HOM05D003264 ORTHO05D003276 2.2e-09 67.0 46 67.4
Gorai.012G141900 Gossypium raimondii HOM05D003264 ORTHO05D003276 2.2e-09 67.0 203 59.1
Lj5A239T84 Lonicera japonica HOM05D003264 ORTHO05D003276 2.2e-09 67.0 47 68.1
AL8G41470 Arabidopsis lyrata HOM05D003264 ORTHO05D003276 2.9e-09 66.6 46 71.7
AT5G64200 Arabidopsis thaliana HOM05D003264 ORTHO05D003276 2.9e-09 66.6 46 71.7
BolC3t18466H Brassica oleracea HOM05D003264 ORTHO05D003276 2.9e-09 66.6 74 56.8
Carub.0008s2499 Capsella rubella HOM05D003264 ORTHO05D003276 2.9e-09 66.6 46 71.7
CARHR278110 Cardamine hirsuta HOM05D003264 ORTHO05D003276 2.9e-09 66.6 46 71.7
Thhalv10004709m.g Eutrema salsugineum HOM05D003264 ORTHO05D003276 2.9e-09 66.6 75 54.7
Sp2g27260 Schrenkiella parvula HOM05D003264 ORTHO05D003276 2.9e-09 66.6 46 71.7
Sed0010987 Sechium edule HOM05D003264 ORTHO05D003276 2.9e-09 66.6 57 57.9
BcaB02g09777 Brassica carinata HOM05D003264 ORTHO05D003276 3.7e-09 66.2 75 56.0
BcaC01g02677 Brassica carinata HOM05D003264 ORTHO05D003276 3.7e-09 66.2 75 56.0
A06p30920 Brassica napus HOM05D003264 ORTHO05D003276 3.7e-09 66.2 75 56.0
C03p62050 Brassica napus HOM05D003264 ORTHO05D003276 3.7e-09 66.2 75 56.0
BraA06t26031Z Brassica rapa HOM05D003264 ORTHO05D003276 3.7e-09 66.2 75 56.0
Gohir.A04G113400 Gossypium hirsutum HOM05D003264 ORTHO05D003276 3.7e-09 66.2 38 78.9
PGSC0003DMG400017719 Solanum tuberosum HOM05D003264 ORTHO05D003276 3.7e-09 66.2 38 76.3
Aa31LG1G17700 Aethionema arabicum HOM05D003264 ORTHO05D003276 4.9e-09 65.9 45 71.1
Lj4A722T71 Lonicera japonica HOM05D003264 ORTHO05D003276 4.9e-09 65.9 47 70.2
Zm00001eb109680 Zea mays HOM05D003264 ORTHO05D003276 4.9e-09 65.9 34 85.3
arahy.Tifrunner.gnm1.ann1.DEZ300 Arachis hypogaea HOM05D003264 ORTHO05D003276 1.1e-08 64.7 57 59.6
arahy.Tifrunner.gnm1.ann1.V5MEW2 Arachis hypogaea HOM05D003264 ORTHO05D003276 1.1e-08 64.7 57 59.6
Eucgr.F00318 Eucalyptus grandis HOM05D003264 ORTHO05D003276 1.1e-08 64.7 57 57.9
Actinidia30767 Actinidia chinensis HOM05D003264 ORTHO05D003276 1.4e-08 64.3 38 76.3
Gohir.D02G196900 Gossypium hirsutum HOM05D003264 ORTHO05D003276 1.9e-08 63.9 47 68.1
Gorai.005G220000 Gossypium raimondii HOM05D003264 ORTHO05D003276 1.9e-08 63.9 47 68.1
Sed0012050 Sechium edule HOM05D003264 ORTHO05D003276 1.9e-08 63.9 47 66.0
Solyc04g074040.3 Solanum lycopersicum HOM05D003264 ORTHO05D003276 1.9e-08 63.9 38 73.7
Sopen04g029250 Solanum pennellii HOM05D003264 ORTHO05D003276 1.9e-08 63.9 38 73.7
Rhsim06G0083100 Rhododendron simsii HOM05D003264 ORTHO05D003276 2.4e-08 63.5 38 73.7
Dinv09033 Davidia involucrata HOM05D003264 ORTHO05D003276 4.1e-08 62.8 150 60.7
Actinidia10317 Actinidia chinensis HOM05D003264 ORTHO05D003276 5.4e-08 62.4 35 77.1
Gohir.D04G154700 Gossypium hirsutum HOM05D003264 ORTHO05D003276 7.0e-08 62.0 152 57.9
Gohir.A03G173800 Gossypium hirsutum HOM05D003264 ORTHO05D003276 9.2e-08 61.6 38 73.7
Actinidia33133 Actinidia chinensis HOM05D003264 ORTHO05D003276 1.2e-07 61.2 35 80.0
Nn5g30123 Nelumbo nucifera HOM05D003264 ORTHO05D003276 1.2e-07 61.2 57 57.9
CiPaw.07G180500 Carya illinoinensis HOM05D003264 ORTHO05D003276 1.6e-07 60.8 38 71.1
Gohir.A13G067100 Gossypium hirsutum HOM05D003264 ORTHO05D003276 1.6e-07 60.8 40 67.5
Gohir.D13G054500 Gossypium hirsutum HOM05D003264 ORTHO05D003276 1.6e-07 60.8 40 67.5
Gorai.013G061300 Gossypium raimondii HOM05D003264 ORTHO05D003276 1.6e-07 60.8 40 67.5
Hma1.2p1_0237F.1_g099420 Hydrangea macrophylla HOM05D003264 ORTHO05D003276 1.6e-07 60.8 35 77.1
Cpa.g.sc2511.2 Carica papaya HOM05D003264 ORTHO05D003276 2.7e-07 60.1 40 67.5
Cc10_g07270 Coffea canephora HOM05D003264 ORTHO05D003276 2.7e-07 60.1 38 68.4
HanXRQChr05g0147361 Helianthus annuus HOM05D003264 ORTHO05D003276 2.7e-07 60.1 38 68.4
Psat2g058440 Pisum sativum HOM05D003264 ORTHO05D003276 2.7e-07 60.1 37 73.0
SEGI_17731 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 2.7e-07 60.1 59 57.6
Ca_18351_v3 Cicer arietinum L. HOM05D003264 ORTHO05D003276 3.5e-07 59.7 37 73.0
ECA232G1728 Erigeron canadensis HOM05D003264 ORTHO05D003276 3.5e-07 59.7 38 68.4
Manes.14G165400 Manihot esculenta HOM05D003264 ORTHO05D003276 3.5e-07 59.7 35 74.3
Rhsim07G0202800 Rhododendron simsii HOM05D003264 ORTHO05D003276 3.5e-07 59.7 48 56.2
TPR.G21121 Trifolium pratense HOM05D003264 ORTHO05D003276 3.5e-07 59.7 37 73.0
Lsat_1_v5_gn_6_102981 Lactuca sativa HOM05D003264 ORTHO05D003276 4.6e-07 59.3 38 65.8
Hund16914 Selenicereus undatus HOM05D003264 ORTHO05D003276 4.6e-07 59.3 57 57.9
SGA_v2.0_scaffold18G08404 Striga asiatica HOM05D003264 ORTHO05D003276 4.6e-07 59.3 38 71.1
MSTRG.22152 Avicennia marina HOM05D003264 ORTHO05D003276 6.0e-07 58.9 38 71.1
FvH4_6g21680 Fragaria vesca HOM05D003264 ORTHO05D003276 6.0e-07 58.9 156 41.7
FAN14G0471 Fragaria x ananassa HOM05D003264 ORTHO05D003276 6.0e-07 58.9 156 41.7
Os03g0388000 Oryza sativa ssp. japonica HOM05D003264 ORTHO05D003276 6.0e-07 58.9 41 63.4
Psat7g098320 Pisum sativum HOM05D003264 ORTHO05D003276 6.0e-07 58.9 37 70.3
SEGI_06350 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 6.0e-07 58.9 60 60.0
PSO541G3918 Papaver somniferum HOM05D003264 ORTHO05D003276 7.8e-07 58.5 35 77.1
PSO781G0066 Papaver somniferum HOM05D003264 ORTHO05D003276 7.8e-07 58.5 35 77.1
SEGI_13212 Sequoiadendron giganteum HOM05D003264 ORTHO05D003276 7.8e-07 58.5 59 57.6
AUR62018901 Chenopodium quinoa HOM05D003264 ORTHO05D003276 1.0e-06 58.2 32 75.0
AUR62027748 Chenopodium quinoa HOM05D003264 ORTHO05D003276 1.0e-06 58.2 32 75.0
Lsat_1_v5_gn_9_41561 Lactuca sativa HOM05D003264 ORTHO05D003276 1.0e-06 58.2 38 65.8
ATR0118G028 Amborella trichopoda HOM05D003264 ORTHO05D003276 1.3e-06 57.8 38 68.4
RcHm_v2.0_Chr3g0478961 Rosa chinensis HOM05D003264 ORTHO05D003276 2.3e-06 57.0 38 65.8
CSS0011997 Camellia sinensis var. sinensis HOM05D003264 ORTHO05D003276 3.0e-06 56.6 35 68.6
FAN02G4093 Fragaria x ananassa HOM05D003264 ORTHO05D003276 3.0e-06 56.6 38 65.8
QL12p036662 Quercus lobata HOM05D003264 ORTHO05D003276 3.0e-06 56.6 40 65.0
MSTRG.16582 Avicennia marina HOM05D003264 ORTHO05D003276 3.9e-06 56.2 46 58.7
MSTRG.24461 Avicennia marina HOM05D003264 ORTHO05D003276 5.0e-06 55.8 35 74.3
CBR_g34604 Chara braunii HOM05D003264 ORTHO05D003276 5.0e-06 55.8 59 54.2
Lj4A103T47 Lonicera japonica HOM05D003264 ORTHO05D003276 5.0e-06 55.8 35 68.6
Phvul.002G208600 Phaseolus vulgaris HOM05D003264 ORTHO05D003276 5.0e-06 55.8 35 71.4
Sed0004939 Sechium edule HOM05D003264 ORTHO05D003276 5.0e-06 55.8 38 65.8
ClCG08G011060 Citrullus lanatus HOM05D003264 ORTHO05D003276 8.6e-06 55.1 35 71.4
MELO3C011357.2 Cucumis melo HOM05D003264 ORTHO05D003276 8.6e-06 55.1 35 71.4
CsaV3_2G024240 Cucumis sativus L. HOM05D003264 ORTHO05D003276 8.6e-06 55.1 35 71.4
Eucgr.G00770 Eucalyptus grandis HOM05D003264 ORTHO05D003276 8.6e-06 55.1 35 68.6
Lsat_1_v5_gn_5_107321 Lactuca sativa HOM05D003264 ORTHO05D003276 8.6e-06 55.1 53 52.8


User provided reference genes

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