Gene: AT5G64200

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G64200
  • Transcript Identifier AT5G64200.1
  • Gene Type Coding gene
  • Location Chr5 : 25681849-25683553 : negative

Gene Family Information

  • ID HOM05D003264
  • #Genes/#Species 210/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G64200.1
  • symbol SC35
  • Alias ATSC35,ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35,At-SC35,ortholog of human splicing factor SC35
  • full_name ortholog of human splicing factor SC35
  • uniprot Q9FMG4

Descriptions

  • Description serine/arginine-rich splicing factor-like protein, putative
  • Computational description ortholog of human splicing factor SC35 (SC35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: cytosol, nuclear speck, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 1404 Blast hits to 650 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 520; Plants - 290; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
NAS
Gene OntologyRNA splicing1
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
TAS
Gene OntologymRNA splicing, via spliceosome2 3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding3
GO:0003729
IDA, HDA
Gene OntologymRNA binding4 5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
IBA
Gene Ontologynuclear speck3 6
GO:0005634
IEA
GOA Databasenucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005829
IDA
GOA Databasecytosol
GO:0005737
IBA
Gene Ontologycytoplasm3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR003954 RNA recognition motif domain, eukaryote
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated