Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.9e-160 567.8 289 100.0
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.1e-95 354.0 259 71.4
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 2.9e-80 302.8 256 62.1
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 9.4e-79 297.7 241 63.5
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.8e-77 293.5 266 60.5
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.0e-77 292.7 264 60.6
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.0e-77 292.7 264 60.6
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 3.0e-77 292.7 267 57.7
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 3.9e-77 292.4 239 63.2
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.1e-76 290.8 238 62.2
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 2.0e-76 290.0 237 65.0
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.6e-76 289.7 238 62.6
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.6e-76 289.7 238 62.6
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 3.3e-76 289.3 253 61.3
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 3.3e-76 289.3 237 62.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 9.7e-76 287.7 237 62.0
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.3e-75 287.3 234 63.7
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.7e-75 287.0 266 57.9
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 2.2e-75 286.6 269 57.6
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.8e-75 286.2 237 62.0
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 3.7e-75 285.8 238 62.6
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.1e-74 284.3 234 61.1
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.4e-74 283.9 266 59.0
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-74 283.9 256 59.0
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 2.4e-74 283.1 269 56.9
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.1e-74 282.7 268 57.5
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 5.3e-74 282.0 239 59.8
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.0e-74 281.6 256 59.0
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 7.0e-74 281.6 239 59.8
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 9.1e-74 281.2 264 58.0
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-73 280.8 268 56.7
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.5e-73 280.4 246 61.0
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 2.0e-73 280.0 234 60.7
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 2.0e-73 280.0 234 60.7
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.5e-73 279.3 244 61.1
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 7.7e-73 278.1 246 61.8
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.7e-72 276.9 238 60.1
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.7e-72 276.9 261 57.5
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 8.5e-72 274.6 239 58.6
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 3.2e-71 272.7 227 63.0
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.2e-71 272.3 268 56.0
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 7.2e-71 271.6 237 59.1
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 9.4e-71 271.2 255 55.7
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.1e-70 270.0 238 58.0
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.4e-69 267.3 251 58.6
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.3e-69 266.5 233 59.2
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.3e-69 266.5 256 56.6
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 6.7e-69 265.0 239 57.7
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.5e-68 263.8 270 54.4
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.0e-68 263.5 271 53.5
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 2.6e-68 263.1 258 56.2
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 3.3e-68 262.7 257 55.6
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 3.3e-68 262.7 258 55.0
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 3.3e-68 262.7 237 57.4
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 7.4e-68 261.5 250 58.0
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 7.4e-68 261.5 215 63.7
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.7e-68 261.2 264 52.7
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 9.7e-68 261.2 259 54.1
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.3e-67 260.8 223 61.0
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.7e-67 260.4 323 48.6
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.7e-67 260.4 233 57.1
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 2.2e-67 260.0 268 54.9
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 4.8e-67 258.8 244 57.0
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 8.2e-67 258.1 269 53.2
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.1e-66 257.7 236 60.2
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.4e-66 257.3 233 57.1
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.8e-66 256.9 245 56.3
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 1.8e-66 256.9 261 54.8
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.8e-66 256.9 225 60.0
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 2.4e-66 256.5 263 52.9
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 7.0e-66 255.0 247 55.9
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 7.0e-66 255.0 260 54.2
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 7.0e-66 255.0 235 57.4
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 7.0e-66 255.0 260 54.2
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 7.0e-66 255.0 270 51.5
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 9.1e-66 254.6 233 56.2
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 9.1e-66 254.6 253 54.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 2.6e-65 253.1 256 54.3
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 3.5e-65 252.7 259 53.7
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 3.5e-65 252.7 245 53.5
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 4.5e-65 252.3 256 53.9
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 4.5e-65 252.3 256 53.9
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 4.5e-65 252.3 256 53.9
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 5.9e-65 251.9 256 53.9
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.9e-65 251.9 255 56.9
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 7.7e-65 251.5 238 57.6
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.7e-64 250.4 264 53.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.7e-64 250.4 257 56.4
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-64 250.0 271 52.0
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.9e-64 249.6 230 60.0
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 3.8e-64 249.2 177 68.9
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 9.4e-63 244.6 203 60.1
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.7e-62 243.0 176 69.3
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 2.7e-62 243.0 297 48.1
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.6e-62 242.7 180 67.8
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 4.7e-62 242.3 227 58.6
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.4e-61 240.7 264 50.0
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.5e-60 237.3 236 53.0
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 7.5e-60 235.0 230 55.2
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.4e-58 230.7 242 52.5
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.5e-55 220.7 204 60.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 5.5e-55 218.8 236 50.4
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 7.2e-55 218.4 252 46.4
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.6e-54 217.2 244 52.9
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.2e-52 211.1 190 61.6
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.3e-51 207.6 137 78.1
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.8e-50 203.8 176 58.0
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.6e-49 200.7 212 49.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.0e-48 198.0 215 52.6
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.2e-47 192.6 172 59.9
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 7.2e-47 191.8 181 59.7
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 6.8e-45 185.3 169 55.6
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 2.2e-43 180.3 242 47.9
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.1e-42 177.9 212 44.8
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 9.2e-42 174.9 119 67.2
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 4.5e-41 172.6 127 65.4
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.3e-40 171.0 152 57.9
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.3e-40 170.2 183 53.6
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.3e-40 170.2 123 71.5
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-38 164.5 114 71.9
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 6.1e-38 162.2 119 65.5
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.8e-37 160.6 151 57.6
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.7e-35 154.1 153 57.5
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 4.9e-35 152.5 180 51.7
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 8.3e-35 151.8 276 35.9
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.7e-33 146.7 210 43.8
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.3e-32 144.4 126 61.1
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.2e-29 132.5 95 68.4
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 4.1e-26 122.9 94 63.8
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 2.1e-25 120.6 252 35.7
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 2.5e-23 113.6 167 40.1
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 7.3e-23 112.1 133 51.1
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.6e-22 109.8 85 63.5
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 4.1e-18 96.3 171 39.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.3e-15 86.3 125 41.6
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.9e-10 70.9 210 29.5
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 5.4e-10 69.3 138 37.7
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 1.3e-06 58.2 207 25.6


User provided reference genes

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