Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0135100 Rhododendron simsii HOM05D001670 ORTHO05D011598 6.2e-74 280.8 150 100.0
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.2e-40 170.2 207 53.6
CSS0045688 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 9.3e-30 134.0 116 59.5
CSS0019437 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 1.2e-29 133.7 107 63.6
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 1.0e-28 130.6 223 39.9
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 1.5e-24 116.7 142 49.3
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 4.5e-24 115.2 115 51.3
MBI14_g46623_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.7e-23 113.2 102 52.9
MBI16_g24355_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.7e-23 113.2 111 51.4
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 2.2e-23 112.8 222 36.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 4.9e-23 111.7 94 56.4
MBI18_g40791_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 4.9e-23 111.7 94 56.4
MBI17_g44285_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 6.5e-23 111.3 105 52.4
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.5e-23 111.3 223 34.5
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.1e-22 110.5 223 34.5
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 5.5e-22 108.2 152 42.1
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.6e-21 106.7 116 48.3
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 1.6e-21 106.7 119 49.6
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 2.1e-21 106.3 116 48.3
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 3.5e-21 105.5 119 46.2
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 4.6e-21 105.1 152 44.7
Haze_02723 Corylus avellana HOM05D001670 ORTHO05D002980 1.3e-20 103.6 118 44.1
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.8e-20 103.2 131 43.5
MBI14_g36712_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.8e-20 103.2 120 47.5
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 2.3e-20 102.8 113 47.8
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 2.3e-20 102.8 116 47.4
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 3.0e-20 102.4 119 44.5
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.9e-20 102.1 146 42.5
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.9e-20 102.1 146 42.5
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 3.9e-20 102.1 134 44.0
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.9e-20 102.1 109 48.6
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 3.9e-20 102.1 116 44.8
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 3.9e-20 102.1 114 43.9
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 3.9e-20 102.1 119 43.7
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 5.1e-20 101.7 114 47.4
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 5.1e-20 101.7 146 43.2
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 5.1e-20 101.7 116 45.7
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 8.7e-20 100.9 223 33.2
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.1e-19 100.5 120 45.8
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 1.5e-19 100.1 119 44.5
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.5e-19 100.1 137 43.1
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.9e-19 99.8 112 44.6
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.9e-19 99.8 114 45.6
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 2.5e-19 99.4 134 42.5
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 3.3e-19 99.0 138 42.0
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 4.3e-19 98.6 119 43.7
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.3e-19 98.6 120 45.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 4.3e-19 98.6 113 46.0
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 4.3e-19 98.6 136 43.4
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 5.7e-19 98.2 136 42.6
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 5.7e-19 98.2 120 45.0
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.7e-19 98.2 120 45.0
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.7e-19 98.2 120 45.0
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 7.4e-19 97.8 119 43.7
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 9.7e-19 97.4 120 45.0
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 9.7e-19 97.4 120 45.0
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 9.7e-19 97.4 136 42.6
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 1.3e-18 97.1 119 43.7
Gohir.D11G082433 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.6e-18 96.7 119 42.9
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 2.2e-18 96.3 114 45.6
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 2.2e-18 96.3 119 43.7
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 2.2e-18 96.3 133 42.9
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 2.8e-18 95.9 119 42.0
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.8e-18 95.9 113 46.0
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 3.7e-18 95.5 113 45.1
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 4.8e-18 95.1 114 45.6
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 4.8e-18 95.1 222 32.4
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 4.8e-18 95.1 222 32.0
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 6.3e-18 94.7 114 45.6
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 8.2e-18 94.4 125 44.0
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 1.1e-17 94.0 219 32.0
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.1e-17 94.0 105 45.7
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 1.1e-17 94.0 120 43.3
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-17 93.6 120 43.3
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 1.4e-17 93.6 116 45.7
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.4e-17 93.6 94 50.0
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.8e-17 93.2 222 31.5
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 1.8e-17 93.2 114 46.5
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 2.4e-17 92.8 113 43.4
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.1e-17 92.4 222 31.5
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 5.3e-17 91.7 144 38.9
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 5.3e-17 91.7 138 41.3
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 5.3e-17 91.7 113 45.1
unitig_0.g1315 Utricularia gibba HOM05D001670 ORTHO05D002980 5.3e-17 91.7 114 44.7
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 6.9e-17 91.3 143 40.6
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 6.9e-17 91.3 114 43.9
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 1.2e-16 90.5 114 41.2
MBI15_g00867_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.2e-16 90.5 78 55.1
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 1.2e-16 90.5 222 30.2
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 2.0e-16 89.7 114 40.4
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 2.0e-16 89.7 100 45.0
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 2.0e-16 89.7 222 31.1
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 3.4e-16 89.0 115 41.7
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 4.5e-16 88.6 113 43.4
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 7.6e-16 87.8 114 42.1
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 7.6e-16 87.8 126 42.1
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 7.6e-16 87.8 114 42.1
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.3e-15 87.0 222 31.5
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.3e-15 87.0 187 34.2
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 2.2e-15 86.3 114 37.7
CDE11G0683 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 2.2e-15 86.3 160 38.8
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 2.9e-15 85.9 117 40.2
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 3.8e-15 85.5 113 40.7
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 5.0e-15 85.1 121 38.0
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 8.5e-15 84.3 116 39.7
MBI03_g02276_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 8.5e-15 84.3 77 53.2
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 8.5e-15 84.3 157 35.0
CDE09G0971 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 1.9e-14 83.2 113 41.6
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.9e-14 83.2 114 36.8
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 1.9e-14 83.2 115 42.6
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 2.5e-14 82.8 112 36.6
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 9.3e-14 80.9 96 41.7
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.2e-13 80.5 115 41.7
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.7e-13 79.3 90 44.4
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 2.7e-13 79.3 121 35.5
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 3.6e-13 79.0 90 43.3
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 4.6e-13 78.6 113 37.2
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 1.0e-12 77.4 102 41.2
CSS0024398 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.8e-12 76.6 88 47.7
BcaNung05012 Brassica carinata HOM05D001670 ORTHO05D002980 3.9e-12 75.5 113 37.2
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 3.9e-12 75.5 113 37.2
C08p54060 Brassica napus HOM05D001670 ORTHO05D002980 3.9e-12 75.5 113 37.2
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 8.8e-12 74.3 146 30.8
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.1e-11 73.9 90 43.3
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.1e-11 73.9 142 34.5
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.9e-11 73.2 90 41.1
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.5e-11 72.8 114 35.1
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.5e-11 72.8 114 35.1
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 3.3e-11 72.4 113 35.4
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 5.7e-11 71.6 126 36.5
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 7.4e-11 71.2 112 33.0
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 7.4e-11 71.2 90 40.0
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 7.4e-11 71.2 90 40.0
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 9.7e-11 70.9 113 33.6
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 1.3e-10 70.5 123 37.4
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.8e-10 69.3 89 40.4
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 3.7e-10 68.9 83 43.4
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 6.3e-10 68.2 93 35.5
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-09 67.4 110 34.5
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.4e-09 67.0 109 33.9
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.4e-09 67.0 109 33.9
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.1e-09 65.9 141 30.5
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 3.1e-09 65.9 113 32.7
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 5.3e-09 65.1 110 33.6
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 6.9e-09 64.7 80 42.5
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 9.1e-09 64.3 115 32.2
Os03g0102300 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D011598 3.4e-08 62.4 89 38.2
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 3.4e-08 62.4 121 33.9
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 5.9e-08 61.6 90 34.4
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.8e-07 58.9 90 37.8
MBI18_g37247_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 3.8e-07 58.9 96 34.4
MBI13_g35169_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 9.4e-06 54.3 84 38.1


User provided reference genes

Program Settings