Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0134900 Rhododendron simsii HOM05D001670 ORTHO05D015800 0.0e+00 1241.5 660 100.0
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.2e-42 177.2 299 44.8
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 1.7e-27 128.6 224 42.0
CSS0045045 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.1e-26 125.9 118 59.3
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.9e-26 125.2 128 57.0
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 9.4e-26 122.9 152 50.0
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.2e-25 122.5 140 51.4
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 8.0e-25 119.8 151 49.7
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 1.4e-24 119.0 132 54.5
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 2.3e-24 118.2 142 51.4
Rhsim13G0147800 Rhododendron simsii HOM05D024647 ORTHO05D340124 2.0e-23 115.2 440 28.9
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 5.7e-23 113.6 214 36.4
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.3e-22 112.5 137 52.6
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.7e-22 112.1 128 50.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.1e-21 109.4 151 45.7
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.4e-21 109.0 131 52.7
Haze_02721 Corylus avellana HOM05D001670 ORTHO05D002980 1.8e-21 108.6 131 51.9
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 1.8e-21 108.6 165 44.8
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.8e-21 108.6 164 43.9
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.4e-21 108.2 181 41.4
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 2.4e-21 108.2 145 46.2
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 3.1e-21 107.8 115 53.9
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 3.1e-21 107.8 115 52.2
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 3.1e-21 107.8 135 47.4
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 5.4e-21 107.1 145 47.6
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 9.1e-21 106.3 145 46.2
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 1.2e-20 105.9 165 44.8
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.6e-20 105.5 118 50.8
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.6e-20 105.5 181 39.8
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 1.6e-20 105.5 132 48.5
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 1.6e-20 105.5 117 52.1
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 2.0e-20 105.1 105 56.2
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 2.0e-20 105.1 112 54.5
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 2.0e-20 105.1 216 37.0
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 2.0e-20 105.1 118 50.8
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 2.7e-20 104.8 105 57.1
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.7e-20 104.8 107 55.1
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.7e-20 104.8 107 55.1
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.7e-20 104.8 107 54.2
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 3.5e-20 104.4 116 52.6
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.5e-20 104.4 105 56.2
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 3.5e-20 104.4 113 54.0
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 3.5e-20 104.4 131 51.9
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 4.5e-20 104.0 115 50.4
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 4.5e-20 104.0 115 50.4
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 5.9e-20 103.6 107 54.2
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 5.9e-20 103.6 166 43.4
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 7.7e-20 103.2 115 51.3
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 1.3e-19 102.4 128 49.2
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.3e-19 102.4 115 49.6
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 1.3e-19 102.4 166 43.4
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.3e-19 102.4 133 48.1
Actinidia20644 Actinidia chinensis HOM05D001670 ORTHO05D015800 1.7e-19 102.1 100 54.0
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.3e-19 101.7 111 52.3
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 2.3e-19 101.7 190 37.9
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 2.3e-19 101.7 115 51.3
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 2.3e-19 101.7 113 52.2
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 2.3e-19 101.7 166 42.8
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 2.3e-19 101.7 137 45.3
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 2.9e-19 101.3 133 47.4
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 2.9e-19 101.3 115 50.4
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 3.8e-19 100.9 117 51.3
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 3.8e-19 100.9 102 54.9
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 3.8e-19 100.9 115 52.2
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 5.0e-19 100.5 166 42.8
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 5.0e-19 100.5 112 54.5
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 5.0e-19 100.5 114 48.2
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 5.0e-19 100.5 114 48.2
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 5.0e-19 100.5 115 50.4
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 5.0e-19 100.5 152 42.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 5.0e-19 100.5 115 49.6
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 6.6e-19 100.1 115 47.8
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 8.6e-19 99.8 165 43.6
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 8.6e-19 99.8 115 50.4
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.1e-18 99.4 115 47.8
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.1e-18 99.4 112 50.0
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.1e-18 99.4 115 50.4
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.5e-18 99.0 107 54.2
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 1.5e-18 99.0 161 41.0
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.9e-18 98.6 167 41.3
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 2.5e-18 98.2 144 43.1
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-18 98.2 133 47.4
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.5e-18 98.2 115 49.6
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 2.5e-18 98.2 103 55.3
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 3.3e-18 97.8 124 50.0
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 3.3e-18 97.8 137 45.3
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 4.2e-18 97.4 112 50.0
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.2e-18 97.4 111 52.3
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.2e-18 97.4 107 52.3
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 5.5e-18 97.1 103 54.4
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.5e-18 97.1 103 54.4
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.5e-18 97.1 103 54.4
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.5e-18 97.1 103 54.4
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.5e-18 97.1 103 54.4
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 5.5e-18 97.1 189 38.6
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 7.2e-18 96.7 106 55.7
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 7.2e-18 96.7 132 45.5
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 9.5e-18 96.3 107 51.4
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 9.5e-18 96.3 107 54.2
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 9.5e-18 96.3 115 48.7
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 9.5e-18 96.3 115 50.4
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.2e-17 95.9 114 47.4
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.6e-17 95.5 113 47.8
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 4.7e-17 94.0 115 47.0
Rhsim03G0123200 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.7e-17 94.0 210 39.5
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.1e-17 93.6 114 43.9
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 6.1e-17 93.6 168 36.9
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.0e-16 92.8 140 45.0
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 1.8e-16 92.0 164 40.2
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 1.8e-16 92.0 164 40.2
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 3.0e-16 91.3 145 42.8
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 3.0e-16 91.3 115 46.1
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 4.0e-16 90.9 112 46.4
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 4.0e-16 90.9 155 40.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 5.2e-16 90.5 101 51.5
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 6.8e-16 90.1 112 47.3
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 8.9e-16 89.7 149 38.9
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 8.9e-16 89.7 149 38.9
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 8.9e-16 89.7 149 38.9
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 1.2e-15 89.4 104 51.0
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-15 89.4 101 51.5
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-15 89.4 101 51.5
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.2e-15 89.4 101 51.5
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.2e-15 89.4 101 51.5
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.2e-15 89.4 101 51.5
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 1.2e-15 89.4 102 50.0
Rhsim06G0088800 Rhododendron simsii HOM05D024647 ORTHO05D338642 1.2e-15 89.4 76 59.2
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.2e-15 89.4 116 47.4
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.5e-15 89.0 131 43.5
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 1.5e-15 89.0 102 50.0
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 2.0e-15 88.6 182 39.0
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 3.4e-15 87.8 96 53.1
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 3.4e-15 87.8 96 53.1
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 3.4e-15 87.8 96 53.1
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 5.7e-15 87.0 114 47.4
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 5.7e-15 87.0 136 40.4
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 9.8e-15 86.3 115 41.7
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 9.8e-15 86.3 103 49.5
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 2.2e-14 85.1 120 45.8
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 6.3e-14 83.6 159 37.7
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 3.1e-13 81.3 100 46.0
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 5.4e-13 80.5 100 47.0
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 7.0e-13 80.1 45 86.7
Actinidia00125 Actinidia chinensis HOM05D001670 ORTHO05D002980 9.2e-13 79.7 80 53.8
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.0e-12 78.6 115 41.7
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.3e-11 75.1 63 61.9
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 3.9e-11 74.3 129 40.3
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 8.6e-11 73.2 54 70.4
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 2.5e-10 71.6 166 33.1
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 3.3e-10 71.2 129 39.5
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.2e-09 69.3 109 39.4
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.1e-09 68.6 101 40.6
Rhsim07G0133700 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.8e-09 68.2 44 79.5
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 3.1e-08 64.7 200 29.5
Rhsim07G0157800 Rhododendron simsii HOM05D024647 ORTHO05D338681 6.8e-08 63.5 64 56.2
A07p05770 Brassica napus HOM05D001670 ORTHO05D015800 2.6e-07 61.6 77 50.6
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 3.4e-07 61.2 83 47.0
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 7.5e-07 60.1 51 62.7
BraA07t28375Z Brassica rapa HOM05D001670 ORTHO05D015800 7.5e-07 60.1 77 49.4
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 9.8e-07 59.7 144 32.6
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 1.3e-06 59.3 91 38.5
A05p35230 Brassica napus HOM05D001670 ORTHO05D015800 1.7e-06 58.9 77 49.4
BraA05t22334Z Brassica rapa HOM05D001670 ORTHO05D015800 1.7e-06 58.9 77 49.4
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 4.9e-06 57.4 88 46.6
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 4.9e-06 57.4 88 46.6
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 8.3e-06 56.6 55 50.9
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 8.3e-06 56.6 55 50.9


User provided reference genes

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