Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0211700 Rhododendron simsii HOM05D002794 ORTHO05D003763 5.9e-130 467.6 248 100.0
Rhsim02G0211400 Rhododendron simsii HOM05D002794 ORTHO05D003763 6.0e-66 255.0 257 56.0
Rhsim07G0122000 Rhododendron simsii HOM05D002794 ORTHO05D003763 1.7e-57 226.9 339 48.7
vmacro23256 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 1.1e-48 197.6 348 45.7
vmacro04586 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 2.0e-45 186.8 357 44.3
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 3.5e-42 176.0 322 42.5
Haze_06521 Corylus avellana HOM05D002794 ORTHO05D003763 1.1e-40 171.0 284 46.8
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 5.6e-40 168.7 340 43.5
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 1.4e-38 164.1 366 40.2
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 3.1e-38 162.9 319 40.4
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 4.0e-38 162.5 358 39.7
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 5.3e-38 162.2 368 39.1
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 9.0e-38 161.4 358 39.9
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 9.0e-38 161.4 356 40.7
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 1.2e-37 161.0 355 39.7
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 1.2e-37 161.0 349 39.8
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 1.5e-37 160.6 355 38.9
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 2.0e-37 160.2 358 39.7
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 2.0e-37 160.2 358 39.7
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.6e-37 159.8 367 40.1
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 3.4e-37 159.5 368 39.9
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 3.4e-37 159.5 357 39.8
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 4.5e-37 159.1 355 38.9
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 5.8e-37 158.7 365 38.9
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 5.8e-37 158.7 319 40.8
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 5.8e-37 158.7 358 38.5
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 7.6e-37 158.3 366 39.9
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 7.6e-37 158.3 355 38.9
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 9.9e-37 157.9 354 40.1
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 9.9e-37 157.9 349 39.8
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 9.9e-37 157.9 364 39.0
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 9.9e-37 157.9 358 39.1
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 9.9e-37 157.9 358 39.4
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 1.3e-36 157.5 358 38.5
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 1.3e-36 157.5 357 39.5
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 1.7e-36 157.1 359 39.6
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 1.7e-36 157.1 353 38.8
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 2.2e-36 156.8 359 39.6
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 2.9e-36 156.4 358 39.1
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 2.9e-36 156.4 359 39.3
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 3.8e-36 156.0 359 39.8
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 4.9e-36 155.6 355 38.3
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 4.9e-36 155.6 359 39.3
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 6.4e-36 155.2 358 39.4
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 8.4e-36 154.8 358 38.0
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 8.4e-36 154.8 359 39.3
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 8.4e-36 154.8 360 38.6
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 8.4e-36 154.8 358 38.3
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 8.4e-36 154.8 363 37.7
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 1.1e-35 154.5 355 38.3
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 1.4e-35 154.1 361 38.8
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 3.2e-35 152.9 359 39.0
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 3.2e-35 152.9 358 38.3
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 4.2e-35 152.5 358 38.8
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 5.5e-35 152.1 353 39.1
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 5.5e-35 152.1 353 37.4
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 5.5e-35 152.1 360 38.6
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 7.1e-35 151.8 366 37.7
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 7.1e-35 151.8 358 38.0
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 7.1e-35 151.8 361 38.2
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 2.1e-34 150.2 366 38.0
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 2.7e-34 149.8 354 38.4
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 3.5e-34 149.4 350 38.9
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 3.5e-34 149.4 364 37.9
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 6.0e-34 148.7 360 38.6
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 7.9e-34 148.3 350 38.6
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 7.9e-34 148.3 155 63.2
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 1.3e-33 147.5 348 39.4
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 1.3e-33 147.5 362 37.8
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 1.8e-33 147.1 353 38.2
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 3.9e-33 146.0 356 36.8
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 5.1e-33 145.6 372 35.5
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 5.1e-33 145.6 359 37.6
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 5.1e-33 145.6 357 38.9
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 6.7e-33 145.2 369 36.9
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 8.7e-33 144.8 369 36.6
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 8.7e-33 144.8 355 38.0
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 1.1e-32 144.4 340 38.5
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 2.5e-32 143.3 302 40.1
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 2.5e-32 143.3 353 38.2
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 3.3e-32 142.9 358 36.9
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 3.3e-32 142.9 153 61.4
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 5.6e-32 142.1 300 38.7
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 7.4e-32 141.7 358 37.2
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 9.6e-32 141.4 357 37.3
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 1.3e-31 141.0 387 35.4
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 1.6e-31 140.6 359 36.5
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 1.6e-31 140.6 358 36.3
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 1.6e-31 140.6 300 39.0
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 2.1e-31 140.2 300 39.0
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 2.1e-31 140.2 385 35.3
PSO541G2705 Papaver somniferum HOM05D002794 ORTHO05D003763 2.1e-31 140.2 349 32.7
Hund21250 Selenicereus undatus HOM05D002794 ORTHO05D003763 2.1e-31 140.2 305 40.0
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.8e-31 139.8 361 36.8
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 2.8e-31 139.8 359 38.2
PSO675G3577 Papaver somniferum HOM05D002794 ORTHO05D003763 2.8e-31 139.8 350 34.9
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 2.8e-31 139.8 152 61.2
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 4.8e-31 139.0 302 39.7
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 4.8e-31 139.0 359 36.8
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 6.2e-31 138.7 349 36.7
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 8.2e-31 138.3 387 34.9
Eucgr.D00651 Eucalyptus grandis HOM05D002794 ORTHO05D003763 1.1e-30 137.9 297 39.1
GSVIVG01002655001 Vitis vinifera HOM05D002794 ORTHO05D003763 1.1e-30 137.9 155 61.3
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 1.4e-30 137.5 357 37.0
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 1.4e-30 137.5 391 35.8
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 1.8e-30 137.1 383 35.2
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 1.8e-30 137.1 349 37.8
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 1.8e-30 137.1 381 35.2
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 2.4e-30 136.7 348 37.4
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 3.1e-30 136.3 291 39.2
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 3.1e-30 136.3 355 36.6
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 4.0e-30 136.0 295 40.0
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 4.0e-30 136.0 362 36.7
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 5.3e-30 135.6 155 60.6
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 5.3e-30 135.6 351 37.9
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 6.9e-30 135.2 155 60.0
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 1.5e-29 134.0 396 33.8
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 2.0e-29 133.7 348 35.9
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 2.0e-29 133.7 344 34.9
Pp3c14_10510 Physcomitrium patens HOM05D002794 ORTHO05D003763 2.0e-29 133.7 358 34.6
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 3.4e-29 132.9 296 39.9
AUR62016968 Chenopodium quinoa HOM05D002794 ORTHO05D003763 1.0e-28 131.3 348 31.9
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 1.0e-28 131.3 351 36.5
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 2.2e-28 130.2 391 33.0
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 2.9e-28 129.8 358 34.9
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 2.9e-28 129.8 358 34.4
CBR_g29963 Chara braunii HOM05D002794 ORTHO05D003763 2.9e-28 129.8 342 33.9
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 2.9e-28 129.8 358 34.1
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 3.8e-28 129.4 363 34.7
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 4.9e-28 129.0 367 34.6
Aqoxy7G01746 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 6.5e-28 128.6 346 36.4
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 8.4e-28 128.3 356 35.7
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 1.4e-27 127.5 351 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3345 Anthoceros agrestis HOM05D002794 ORTHO05D003763 2.5e-27 126.7 359 34.8
Pp3c17_13490 Physcomitrium patens HOM05D002794 ORTHO05D003763 2.5e-27 126.7 354 33.9
vmacro03843 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 2.5e-27 126.7 299 39.1
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 3.2e-27 126.3 367 33.5
COL.COLO4_31110 Corchorus olitorius HOM05D002794 ORTHO05D003763 3.2e-27 126.3 347 32.3
Oeu050833.1 Olea europaea HOM05D002794 ORTHO05D003763 1.2e-26 124.4 155 59.4
DCAR_001736 Daucus carota HOM05D002794 ORTHO05D003763 3.5e-26 122.9 302 36.8
Ah.09g235770 Amaranthus hybridus HOM05D002794 ORTHO05D003763 2.3e-25 120.2 336 34.5
Carub.0007s2870 Capsella rubella HOM05D002794 ORTHO05D003763 6.7e-25 118.6 301 34.9
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.1e-24 117.9 345 31.6
Nitab4.5_0007957g0040 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.9e-24 117.1 298 34.2
CARHR228380 Cardamine hirsuta HOM05D002794 ORTHO05D003763 3.3e-24 116.3 294 38.8
Rhsim08G0091600 Rhododendron simsii HOM05D002794 ORTHO05D003763 5.7e-24 115.5 298 36.2
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 1.3e-23 114.4 359 34.8
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 2.8e-23 113.2 359 33.7
RcHm_v2.0_Chr2g0163041 Rosa chinensis HOM05D002794 ORTHO05D003763 2.8e-23 113.2 351 33.0
Zm00001eb271720 Zea mays HOM05D002794 ORTHO05D003763 4.8e-23 112.5 298 35.6
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 8.2e-23 111.7 359 33.4
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 5.3e-22 109.0 359 33.7
FAN14G4862 Fragaria x ananassa HOM05D002794 ORTHO05D003763 9.0e-22 108.2 350 33.1
FAN02G3067 Fragaria x ananassa HOM05D002794 ORTHO05D003763 2.6e-21 106.7 344 33.7
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 5.9e-21 105.5 379 31.9
Actinidia01901 Actinidia chinensis HOM05D002794 ORTHO05D003763 1.3e-20 104.4 333 36.6
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 1.7e-20 104.0 379 31.7
SalBow3G1823 Salvia bowleyana HOM05D002794 ORTHO05D003763 3.8e-20 102.8 203 46.3
FvH4_6g45300 Fragaria vesca HOM05D002794 ORTHO05D003763 1.9e-19 100.5 350 33.7
Sc05g0007870 Simmondsia chinensis HOM05D002794 ORTHO05D003763 2.5e-19 100.1 287 36.9
Lj1g0004029 Lotus japonicus HOM05D002794 ORTHO05D003763 9.4e-19 98.2 355 33.2
Peaxi162Scf00535g00054 Petunia axillaris HOM05D002794 ORTHO05D003763 1.1e-16 91.3 278 29.5
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 1.1e-16 91.3 278 29.5
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 1.1e-16 91.3 278 29.5
Lalb_Chr16g0383541 Lupinus albus HOM05D002794 ORTHO05D003763 7.4e-16 88.6 117 60.7
SEGI_11918 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 9.7e-16 88.2 258 29.8
SEGI_02703 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 1.1e-14 84.7 81 60.5
Cpa.g.sc1117.1 Carica papaya HOM05D002794 ORTHO05D003763 6.9e-14 82.0 110 58.2
PRCOL_00004721 Prasinoderma coloniale HOM05D002794 ORTHO05D003763 1.0e-12 78.2 367 28.9
Carub.0006s3292 Capsella rubella HOM05D002794 ORTHO05D003763 3.2e-11 73.2 115 40.9
Atru.chr4.2241 Acer truncatum HOM05D002794 ORTHO05D003763 4.2e-11 72.8 240 35.8
AUR62014781 Chenopodium quinoa HOM05D002794 ORTHO05D003763 5.5e-11 72.4 305 26.6
Cre12.g514450 Chlamydomonas reinhardtii HOM05D002794 ORTHO05D003763 1.2e-10 71.2 384 26.8
MCO05G100 Micromonas commoda HOM05D002794 ORTHO05D003763 4.7e-10 69.3 354 29.1
Dinv40533 Davidia involucrata HOM05D002794 ORTHO05D001608 6.7e-09 65.5 233 26.6
Ciclev10006607m.g Citrus clementina HOM05D002794 ORTHO05D003763 2.0e-08 63.9 301 26.6
ATR0006G055 Amborella trichopoda HOM05D002794 ORTHO05D003763 2.6e-08 63.5 107 39.3
ATR0618G401 Amborella trichopoda HOM05D002794 ORTHO05D003763 2.6e-08 63.5 107 39.3
SalBow1G1119 Salvia bowleyana HOM05D002794 ORTHO05D013792 3.3e-08 63.2 104 59.6
AT1G11520 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 4.4e-08 62.8 64 54.7
SMO146G0248 Selaginella moellendorffii HOM05D002794 ORTHO05D003763 4.8e-07 59.3 55 50.9
Atru.chr1.584 Acer truncatum HOM05D002794 ORTHO05D003763 1.1e-06 58.2 107 35.5
SalBow5G3052 Salvia bowleyana HOM05D002794 ORTHO05D003763 1.8e-06 57.4 125 33.6
Lj1g0005259 Lotus japonicus HOM05D002794 ORTHO05D003763 3.1e-06 56.6 184 32.6
RcHm_v2.0_Chr5g0006931 Rosa chinensis HOM05D002794 ORTHO05D013792 5.3e-06 55.8 90 44.4


User provided reference genes

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