Gene: PGSC0003DMG400022432
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400022432
- Transcript Identifier PGSC0003DMT400057783
- Gene Type Coding gene
- Location ST4.03ch02 : 34275754-34285327 : positive
Gene Family Information
- ID HOM05D002794
- #Genes/#Species 248/97
- Phylogenetic origin
- ID ORTHO05D003763
- #Genes/#Species 206/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- pacid 37424280
- id PGSC0003DMG400022432.v4.03
- uniprot M1C1N2
Descriptions
- Description Splicing factor 3B subunit
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IBA | GOA Database | mRNA splicing, via spliceosome |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G21660 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0071013 | IBA | GOA Database | catalytic step 2 spliceosome | |
| GO:0071011 | IBA | GOA Database | precatalytic spliceosome | |
| GO:0005689 | IBA | GOA Database | U12-type spliceosomal complex | |
| GO:0005686 | IBA | GOA Database | U2 snRNP | |
| GO:0005684 | IBA | GOA Database | U2-type spliceosomal complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.1.2.4.2 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B2 |