Gene: AT4G21660

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G21660
  • Transcript Identifier AT4G21660.1
  • Gene Type Coding gene
  • Location Chr4 : 11506259-11509772 : negative

Gene Family Information

  • ID HOM05D002794
  • #Genes/#Species 248/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G21660.1
  • uniprot Q8H0V8

Descriptions

  • Description proline-rich spliceosome-associated (PSP) family protein
  • Computational description proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1); Has 10486 Blast hits to 6076 proteins in 488 species: Archae - 22; Bacteria - 303; Metazoa - 4991; Fungi - 920; Plants - 455; Viruses - 239; Other Eukaryotes - 3556 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
IEA
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0071011
IBA
Gene Ontologyprecatalytic spliceosome1
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0005689
IBA
Gene OntologyU12-type spliceosomal complex1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0005684
IBA
Gene OntologyU2-type spliceosomal complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007180 Domain of unknown function DUF382
IPR006568 PSP, proline-rich
Mapman id Description
16.2.1.2.4.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B2