Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.7e-111 403.7 208 100.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.9e-45 186.0 107 93.5
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.9e-45 186.0 107 93.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 6.4e-45 184.9 111 91.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.1e-44 184.1 111 88.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.1e-44 184.1 111 89.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.1e-44 182.2 111 87.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.1e-44 182.2 107 92.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 7.0e-44 181.4 107 90.7
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 7.0e-44 181.4 111 89.2
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 9.2e-44 181.0 111 88.3
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.2e-44 181.0 111 87.4
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 9.2e-44 181.0 111 89.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.2e-43 180.6 111 86.5
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.2e-43 180.6 111 87.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 1.2e-43 180.6 111 89.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 1.2e-43 180.6 111 87.4
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.6e-43 180.3 111 90.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 1.6e-43 180.3 111 86.5
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 1.6e-43 180.3 111 85.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 2.7e-43 179.5 111 87.4
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 2.7e-43 179.5 111 85.6
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 2.7e-43 179.5 111 87.4
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 2.7e-43 179.5 111 87.4
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.5e-43 179.1 111 86.5
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 3.5e-43 179.1 111 86.5
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 4.6e-43 178.7 107 89.7
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 6.0e-43 178.3 111 87.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 6.0e-43 178.3 111 86.5
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 6.0e-43 178.3 111 85.6
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 6.0e-43 178.3 111 85.6
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 6.0e-43 178.3 111 85.6
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 6.0e-43 178.3 111 86.5
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 6.0e-43 178.3 111 86.5
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 1.0e-42 177.6 111 84.7
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 1.0e-42 177.6 111 84.7
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 1.0e-42 177.6 111 84.7
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.0e-42 177.6 107 89.7
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.0e-42 177.6 111 83.8
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.0e-42 177.6 111 87.4
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.0e-42 177.6 107 88.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.3e-42 177.2 111 84.7
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 1.3e-42 177.2 111 83.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.3e-42 177.2 111 84.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.3e-42 177.2 107 88.8
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-42 177.2 111 85.6
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-42 177.2 111 85.6
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 1.3e-42 177.2 111 84.7
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 1.7e-42 176.8 111 82.9
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 2.3e-42 176.4 111 84.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.3e-42 176.4 110 86.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 2.3e-42 176.4 107 87.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 2.3e-42 176.4 107 87.9
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 2.3e-42 176.4 111 88.3
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 3.0e-42 176.0 111 85.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 3.9e-42 175.6 111 84.7
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 3.9e-42 175.6 111 82.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 3.9e-42 175.6 111 82.9
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 5.1e-42 175.3 111 85.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 5.1e-42 175.3 111 85.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 5.1e-42 175.3 111 84.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.6e-42 174.9 107 86.9
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 6.6e-42 174.9 111 84.7
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 8.6e-42 174.5 111 84.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.5e-41 173.7 111 84.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.5e-41 173.7 111 84.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.5e-41 173.7 111 83.8
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.9e-41 173.3 110 85.5
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.9e-41 173.3 111 84.7
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-41 173.3 111 84.7
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 2.5e-41 172.9 111 84.7
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.5e-41 172.9 111 83.8
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.3e-41 172.6 111 84.7
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 4.3e-41 172.2 111 83.8
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.3e-41 172.2 111 83.8
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 4.3e-41 172.2 107 86.0
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 5.6e-41 171.8 111 83.8
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.2e-40 170.6 111 83.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.2e-40 170.6 111 81.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.2e-40 170.6 111 84.7
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 2.1e-40 169.9 107 82.2
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 2.1e-40 169.9 111 82.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 2.1e-40 169.9 111 82.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 2.1e-40 169.9 111 82.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 2.1e-40 169.9 111 83.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 2.8e-40 169.5 111 81.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 3.6e-40 169.1 111 80.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 3.6e-40 169.1 111 80.2
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 3.6e-40 169.1 111 80.2
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 3.6e-40 169.1 111 80.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 3.6e-40 169.1 111 82.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 3.6e-40 169.1 111 80.2
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 4.7e-40 168.7 111 80.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.2e-40 168.3 107 81.3
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 6.2e-40 168.3 111 78.4
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 8.1e-40 167.9 111 79.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 1.1e-39 167.5 107 81.3
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.1e-39 167.5 111 78.4
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.8e-39 166.8 111 79.3
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.8e-39 166.8 111 82.0
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.8e-39 166.8 111 82.0
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 2.3e-39 166.4 111 79.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.1e-39 166.0 111 79.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.1e-39 166.0 106 84.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.7e-37 160.2 111 74.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.2e-37 159.8 107 77.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.9e-37 159.5 107 79.4
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.9e-36 156.8 111 74.8
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.9e-36 156.8 102 78.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.0e-34 149.4 108 72.2
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.2e-32 144.1 89 82.0
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 6.2e-32 141.7 111 73.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.7e-29 133.7 107 61.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.4e-28 130.6 107 62.6
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.2e-28 129.4 104 62.5
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.2e-28 129.0 107 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.2e-28 129.0 107 58.9
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 7.1e-28 128.3 109 56.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 9.2e-28 127.9 109 60.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.7e-27 126.3 75 88.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.0e-26 124.4 102 65.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.5e-25 120.6 80 75.0
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 8.1e-24 114.8 104 55.8
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 9.0e-23 111.3 70 84.3
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 4.4e-22 109.0 103 64.1
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.5e-17 94.0 111 45.9
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.6e-16 90.5 111 54.1
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.6e-16 90.5 108 42.6
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.8e-16 89.0 60 75.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.9e-13 79.0 52 78.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.4e-12 75.5 101 41.6
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.1e-09 67.8 40 85.0
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.3e-08 64.3 103 35.9
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.0e-07 59.3 34 94.1


User provided reference genes

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