Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.1e-292 1009.2 513 100.0
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 1.1e-258 896.3 519 87.5
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 6.1e-222 774.2 518 76.3
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 9.1e-218 760.4 518 74.3
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.5e-167 593.6 521 60.7
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 5.4e-162 575.1 525 57.0
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 1.1e-157 560.8 525 57.9
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 4.0e-157 558.9 531 58.6
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.2e-156 557.4 525 58.1
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 1.1e-154 550.8 573 55.8
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 7.1e-154 548.1 525 56.4
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.7e-152 543.5 597 52.1
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 1.8e-149 533.5 531 55.6
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 1.3e-147 527.3 558 51.6
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 2.2e-147 526.6 549 53.7
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 5.4e-146 521.9 559 52.2
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 1.2e-145 520.8 559 51.9
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 2.1e-145 520.0 554 51.8
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 2.7e-145 519.6 537 53.3
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 6.0e-145 518.5 705 44.8
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.5e-143 513.8 562 49.8
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 1.9e-143 513.5 560 50.7
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 5.6e-143 511.9 572 48.3
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 2.1e-142 510.0 561 51.2
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 6.2e-142 508.4 573 49.6
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 5.3e-141 505.4 536 51.3
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.2e-140 504.2 562 51.4
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 3.4e-140 502.7 526 51.5
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 7.6e-140 501.5 568 48.4
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.7e-139 500.4 563 49.2
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 8.4e-139 498.0 548 51.3
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 1.4e-138 497.3 526 52.5
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 7.1e-138 495.0 534 52.4
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 9.3e-138 494.6 582 48.3
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.2e-137 494.2 569 49.6
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 6.0e-137 491.9 562 49.3
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 3.9e-136 489.2 544 50.6
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 5.1e-136 488.8 549 51.2
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 1.5e-135 487.3 558 48.4
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 3.6e-134 482.6 568 47.5
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 1.4e-133 480.7 542 49.1
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 3.1e-133 479.6 542 48.9
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 5.3e-133 478.8 560 48.4
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 3.4e-132 476.1 536 51.5
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.7e-131 473.8 505 52.1
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.9e-131 473.0 563 48.0
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.4e-130 469.9 580 47.6
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 4.2e-130 469.2 526 50.8
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 1.6e-129 467.2 525 49.7
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 1.0e-128 464.5 526 49.8
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.3e-127 459.5 574 47.0
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 7.4e-127 458.4 553 47.9
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 8.1e-126 454.9 453 55.6
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 4.9e-123 445.7 464 51.7
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.6e-121 440.7 530 47.9
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 2.1e-121 440.3 532 47.0
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 2.3e-120 436.8 545 46.1
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 3.9e-120 436.0 545 45.3
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 5.1e-120 435.6 511 47.6
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.1e-119 434.5 584 44.3
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 2.1e-118 430.3 600 42.7
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.1e-117 427.9 531 48.4
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 2.4e-117 426.8 541 44.5
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 2.4e-117 426.8 538 45.4
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 9.0e-117 424.9 589 42.8
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 2.6e-116 423.3 501 48.3
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.5e-116 422.5 663 40.3
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 6.5e-115 418.7 516 47.7
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.9e-114 417.2 546 42.9
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 2.5e-114 416.8 536 43.1
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 1.8e-112 410.6 529 45.4
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 5.1e-112 409.1 534 43.4
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 9.7e-111 404.8 503 46.5
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 2.4e-109 400.2 546 41.9
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 5.3e-109 399.1 544 41.9
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 7.7e-108 395.2 557 42.5
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 1.0e-107 394.8 538 42.4
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 2.9e-107 393.3 538 41.8
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 2.9e-107 393.3 545 40.9
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.4e-104 384.4 457 47.7
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 2.3e-104 383.6 537 41.2
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 3.9e-104 382.9 578 41.5
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 5.3e-101 372.5 521 41.3
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 1.0e-99 368.2 467 46.0
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.9e-98 364.0 491 45.8
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 2.2e-94 350.5 557 40.4
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 2.0e-92 344.0 554 39.0
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.7e-84 317.0 475 41.5
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 5.9e-84 315.8 550 37.5
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.6e-81 306.6 380 47.9
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 1.2e-79 301.6 505 40.0
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 5.7e-79 299.3 416 44.0
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 1.7e-78 297.7 334 45.8
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.8e-72 277.7 435 41.6
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.2e-70 270.8 442 39.6
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 2.8e-70 270.4 593 32.0
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.1e-69 266.9 205 64.9
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 3.5e-68 263.5 372 44.9
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 7.7e-68 262.3 137 92.7
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 1.5e-66 258.1 470 37.4
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.0e-64 250.0 423 38.8
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 2.0e-60 237.7 192 58.9
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 8.6e-59 232.3 536 33.4
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 2.4e-53 214.2 211 52.1
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 3.3e-50 203.8 354 41.0
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 5.2e-48 196.4 148 62.2
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.4e-47 193.7 148 61.5
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.6e-41 173.7 316 40.5
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 7.6e-39 166.0 209 51.2
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.9e-38 164.1 119 67.2
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 6.4e-38 162.9 581 28.6
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 1.2e-31 142.1 121 57.9
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 1.1e-29 135.6 327 30.6
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 5.1e-27 126.7 75 85.3
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 5.3e-24 116.7 159 41.5
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 2.1e-17 94.7 81 65.4
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 4.5e-15 87.0 192 29.7
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.2e-13 80.9 66 59.1
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.2e-13 80.5 51 72.5
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 6.9e-08 63.2 44 70.5


User provided reference genes

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