Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0228871 Rosa chinensis HOM05D004901 ORTHO05D005592 0.0e+00 1521.5 784 100.0
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 0.0e+00 1212.2 787 81.6
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 0.0e+00 1206.8 787 81.3
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 0.0e+00 1205.7 787 81.6
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 2.5e-267 925.6 792 66.2
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 1.2e-216 757.3 809 57.2
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 5.3e-193 678.7 801 53.2
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 1.3e-183 647.5 801 53.2
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 1.0e-164 584.7 801 48.3
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 3.4e-155 553.1 802 47.4
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 9.1e-153 545.0 802 46.1
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 3.3e-150 536.6 800 46.0
Atru.chr13.2408 Acer truncatum HOM05D004901 ORTHO05D005592 1.4e-148 531.2 801 46.1
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 5.4e-145 519.2 852 43.9
Duzib177G0087 Durio zibethinus HOM05D004901 ORTHO05D005592 8.0e-141 505.4 804 44.8
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 3.5e-136 490.0 858 42.9
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 7.3e-134 482.3 810 43.7
Lj7C288T6 Lonicera japonica HOM05D004901 ORTHO05D005592 4.0e-132 476.5 807 43.6
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 5.2e-132 476.1 810 42.7
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 6.8e-132 475.7 810 42.7
Dinv02586 Davidia involucrata HOM05D004901 ORTHO05D005592 5.6e-126 456.1 786 43.1
CiPaw.03G019300 Carya illinoinensis HOM05D004901 ORTHO05D005592 7.6e-123 445.7 638 48.7
Haze_13904 Corylus avellana HOM05D004901 ORTHO05D005592 3.9e-119 433.3 559 50.8
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 3.4e-115 420.2 919 38.0
Rhsim11G0056100 Rhododendron simsii HOM05D004901 ORTHO05D005592 9.3e-113 412.1 806 41.6
Thecc.08G186400 Theobroma cacao HOM05D004901 ORTHO05D005592 6.0e-112 409.5 594 47.3
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 2.5e-110 404.1 827 38.8
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 3.4e-107 393.7 799 39.0
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 1.6e-104 384.8 982 34.3
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 3.5e-104 383.6 821 38.1
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 1.1e-102 378.6 800 38.6
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 1.3e-101 375.2 795 37.7
Sc23g0001370 Simmondsia chinensis HOM05D004901 ORTHO05D005592 6.2e-101 372.9 858 36.6
Prupe.2G019600 Prunus persica HOM05D004901 ORTHO05D005592 3.4e-99 367.1 497 46.9
CSS0009856 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 3.2e-97 360.5 605 43.1
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 1.6e-96 358.2 798 36.3
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 3.0e-95 354.0 801 37.2
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 2.5e-94 350.9 809 37.6
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 4.3e-94 350.1 793 37.3
Cpa.g.sc66.23 Carica papaya HOM05D004901 ORTHO05D005592 1.3e-93 348.6 591 43.7
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.1e-92 345.5 852 36.7
MSTRG.1544 Avicennia marina HOM05D004901 ORTHO05D005592 1.4e-92 345.1 814 35.7
MBI17_g21472_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 1.4e-92 345.1 842 37.5
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 1.8e-92 344.7 819 35.9
PSO170G4536 Papaver somniferum HOM05D004901 ORTHO05D005592 1.3e-90 338.6 852 37.2
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 4.9e-90 336.7 798 35.6
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 8.4e-90 335.9 788 37.3
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 4.2e-89 333.6 814 35.9
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 1.2e-88 332.0 821 35.1
ClCG11G008660 Citrullus lanatus HOM05D004901 ORTHO05D005592 3.5e-88 330.5 814 35.4
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 7.9e-88 329.3 832 35.0
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 1.0e-87 328.9 792 36.6
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 1.0e-87 328.9 824 35.9
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 1.3e-87 328.6 807 35.6
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 1.3e-87 328.6 809 35.1
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 1.8e-87 328.2 790 36.2
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 3.0e-87 327.4 818 35.5
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 5.1e-87 326.6 853 36.9
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 1.5e-86 325.1 791 36.3
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 1.9e-86 324.7 793 36.6
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 2.1e-85 321.2 803 34.1
BcaC05g27729 Brassica carinata HOM05D004901 ORTHO05D005592 8.2e-85 319.3 820 35.1
C05p37130 Brassica napus HOM05D004901 ORTHO05D005592 8.2e-85 319.3 820 35.1
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 9.0e-84 315.8 804 35.3
Ca_19714_v3 Cicer arietinum L. HOM05D004901 ORTHO05D005592 2.0e-83 314.7 781 38.2
BcaB03g13661 Brassica carinata HOM05D004901 ORTHO05D005592 7.6e-83 312.8 819 33.6
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 2.9e-82 310.8 852 33.9
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 3.2e-81 307.4 819 34.3
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 5.5e-81 306.6 798 36.2
BolC5t32466H Brassica oleracea HOM05D004901 ORTHO05D005592 9.3e-81 305.8 862 34.5
CARHR034280 Cardamine hirsuta HOM05D004901 ORTHO05D005592 4.6e-80 303.5 809 33.1
Cc00_g06540 Coffea canephora HOM05D004901 ORTHO05D005592 6.1e-80 303.1 800 34.8
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 8.7e-79 299.3 772 36.1
Lsat_1_v5_gn_8_141780 Lactuca sativa HOM05D004901 ORTHO05D005592 1.3e-77 295.4 793 35.8
VMungo1127G1203 Vigna mungo HOM05D004901 ORTHO05D005592 2.0e-75 288.1 778 34.7
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 1.0e-71 275.8 795 34.8
arahy.Tifrunner.gnm1.ann1.0Z9JWZ Arachis hypogaea HOM05D004901 ORTHO05D005592 5.1e-71 273.5 793 34.8
vmacro00755 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 5.1e-71 273.5 516 42.4
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 9.7e-70 269.2 812 32.9
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 2.2e-69 268.1 828 33.2
Aa31LG6G8790 Aethionema arabicum HOM05D004901 ORTHO05D005592 1.8e-68 265.0 813 32.2
HanXRQChr17g0559191 Helianthus annuus HOM05D004901 ORTHO05D005592 4.1e-68 263.8 793 34.6
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 2.6e-67 261.2 980 30.1
CsaV3_2G033030 Cucumis sativus L. HOM05D004901 ORTHO05D005592 4.7e-64 250.4 604 35.8
Peaxi162Scf00391g00532 Petunia axillaris HOM05D004901 ORTHO05D005592 1.1e-60 239.2 607 36.1
Nitab4.5_0003010g0040 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.7e-58 231.9 587 35.6
HPP92_004438 Vanilla planifolia HOM05D004901 ORTHO05D005592 7.5e-54 216.5 846 30.5
CDE04G3479 Ceratophyllum demersum HOM05D004901 ORTHO05D005592 9.7e-54 216.1 863 29.2
Solyc11g020770.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 6.3e-53 213.4 607 33.8
Prupe.2G019700 Prunus persica HOM05D004901 ORTHO05D005592 8.2e-53 213.0 186 66.7
ATR0749G100 Amborella trichopoda HOM05D004901 ORTHO05D005592 1.8e-52 211.8 837 31.3
Nitab4.5_0000167g0270 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.2e-51 209.1 668 32.2
SHI09022 Sapria himalayana HOM05D004901 ORTHO05D005592 1.2e-51 209.1 792 30.2
Zm00001eb201140 Zea mays HOM05D004901 ORTHO05D005592 5.0e-42 177.2 804 29.0
Aqoxy4G02416 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 8.0e-40 169.9 225 46.2
Peaxi162Scf00391g00531 Petunia axillaris HOM05D004901 ORTHO05D005592 1.0e-34 152.9 149 53.7
vmacro00754 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 6.6e-34 150.2 148 57.4
Solyc11g020760.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 4.7e-32 144.1 153 49.7
Nitab4.5_0003010g0060 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.2e-30 139.4 150 50.0
SEGI_29563 Sequoiadendron giganteum HOM05D004901 ORTHO05D005592 1.1e-28 132.9 116 59.5
AagrBONN_evm.TU.Sc2ySwM_228.534 Anthoceros agrestis HOM05D004901 ORTHO05D005592 8.6e-26 123.2 1025 25.2
Nitab4.5_0000167g0280 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.5e-22 112.5 115 51.3
Pp3c20_9530 Physcomitrium patens HOM05D004901 ORTHO05D005592 1.0e-18 99.8 957 24.1
CSS0042276 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 1.3e-18 99.4 190 43.2
Aqoxy4G02415 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.5e-17 95.9 369 31.2
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 1.9e-17 95.5 262 33.6
Mapoly0001s0472 Marchantia polymorpha HOM05D004901 ORTHO05D005592 1.6e-16 92.4 1060 23.8
Hma1.2p1_0503F.1_g168030 Hydrangea macrophylla HOM05D004901 ORTHO05D005592 4.4e-14 84.3 191 38.2
Psat5g126920 Pisum sativum HOM05D004901 ORTHO05D005592 3.1e-07 61.6 115 43.5


User provided reference genes

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