Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 0.0e+00 1103.6 541 100.0
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.4e-301 1038.1 541 94.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.1e-277 957.6 541 86.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.6e-276 955.7 541 86.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.0e-275 953.0 541 86.7
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.7e-273 944.9 541 86.5
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.4e-248 862.8 504 85.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 9.0e-200 700.7 538 67.3
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 9.6e-194 680.6 545 65.5
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 5.5e-165 585.1 566 57.4
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.8e-163 580.1 565 57.2
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.8e-163 580.1 565 57.2
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 6.3e-161 571.6 542 57.0
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.5e-154 550.4 552 53.3
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.5e-149 533.9 570 54.6
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.1e-144 517.7 554 51.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 9.5e-141 504.6 568 50.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.6e-140 502.7 566 50.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.8e-139 500.4 545 51.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 5.2e-139 498.8 548 51.6
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.4e-138 495.7 532 50.4
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 4.9e-137 492.3 555 50.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.9e-137 492.3 543 52.9
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.1e-136 491.1 538 52.0
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.2e-135 487.6 551 50.3
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.6e-135 487.3 546 50.5
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.3e-134 484.2 537 52.7
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.9e-134 483.0 541 48.8
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.1e-133 481.1 540 50.6
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.5e-133 480.7 553 50.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.8e-132 476.5 575 48.5
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 6.1e-132 475.3 555 49.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.0e-131 473.0 550 49.6
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 6.8e-131 471.9 563 46.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 6.8e-131 471.9 563 48.5
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.7e-129 467.2 530 49.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.9e-129 466.5 393 61.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 6.4e-129 465.3 555 47.9
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.4e-128 464.2 548 49.1
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.4e-128 464.2 537 48.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 7.0e-128 461.8 518 49.6
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 7.8e-127 458.4 533 49.2
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.6e-126 455.3 550 47.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 6.6e-126 455.3 542 48.9
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.5e-125 454.1 541 48.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.8e-123 447.2 420 56.7
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.1e-123 446.4 565 46.7
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.1e-123 446.4 565 46.5
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 6.8e-123 445.3 516 50.6
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.2e-122 444.5 539 49.0
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-122 443.4 565 46.9
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 9.8e-122 441.4 535 49.0
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.3e-121 441.0 519 48.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.9e-121 439.9 547 48.3
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.1e-120 438.0 539 49.0
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.4e-120 437.6 518 48.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 5.4e-120 435.6 594 44.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.6e-119 434.1 550 46.5
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.6e-119 434.1 517 47.4
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.0e-119 433.7 533 47.3
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.8e-119 431.8 545 47.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 7.8e-119 431.8 531 47.8
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.0e-118 431.4 543 48.1
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.3e-118 431.0 532 47.6
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.3e-118 430.3 527 46.9
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.5e-117 426.8 529 46.7
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.2e-116 424.5 550 46.9
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.6e-116 422.9 430 52.1
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.8e-115 420.6 445 52.4
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 4.0e-115 419.5 528 47.2
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 8.9e-115 418.3 541 44.7
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.2e-114 417.9 533 46.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.0e-114 417.2 513 45.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.9e-112 410.6 542 45.2
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.1e-112 408.7 528 45.6
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 4.6e-111 406.0 528 44.9
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.6e-108 397.5 566 42.9
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.7e-105 387.5 544 43.8
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.9e-105 386.0 529 43.5
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.4e-104 383.6 522 43.1
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.4e-104 383.6 518 44.8
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 7.1e-104 382.1 565 40.7
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.1e-103 380.6 512 44.9
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 3.5e-103 379.8 526 42.8
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-101 374.8 518 44.2
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 4.7e-100 369.4 536 42.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.1e-99 366.7 512 45.3
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.4e-96 357.1 523 40.5
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.2e-95 354.8 547 42.0
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.7e-94 350.9 363 54.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.1e-93 348.2 542 40.0
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-91 341.7 523 39.2
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.0e-91 339.7 323 56.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.8e-90 335.9 529 40.3
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.2e-89 334.0 533 41.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.2e-89 334.0 545 39.4
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.4e-88 331.3 412 45.1
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 9.3e-88 328.6 524 37.6
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.7e-87 327.0 509 39.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.0e-87 325.9 428 45.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.8e-86 324.3 532 39.1
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.1e-85 321.6 523 40.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.1e-84 317.4 560 36.1
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.4e-83 314.7 305 55.1
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 5.3e-83 312.8 514 39.3
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.2e-81 307.4 542 35.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.4e-80 303.9 312 52.9
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 4.6e-79 299.7 525 37.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.0e-78 297.0 538 37.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 6.7e-78 295.8 530 37.7
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.1e-77 295.0 536 37.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.5e-77 294.7 539 37.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.1e-76 290.8 532 37.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 6.9e-75 285.8 335 48.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 2.5e-72 277.3 517 34.8
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.3e-70 271.6 408 41.2
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 2.2e-68 264.2 508 35.8
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.8e-68 263.8 251 57.0
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.5e-66 256.5 381 41.7
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.5e-58 229.9 180 63.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.7e-57 228.0 316 43.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 4.7e-55 219.9 610 27.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.4e-54 218.4 559 29.3
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.1e-53 215.3 509 32.6
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.4e-53 213.4 628 26.4
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.1e-47 194.5 189 54.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.2e-44 182.6 230 46.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.5e-40 171.8 227 44.5
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.3e-38 164.5 253 38.7
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.4e-37 160.2 541 28.3
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.4e-35 154.5 147 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-33 147.9 588 24.1
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 9.4e-32 142.5 137 53.3
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.1e-27 127.5 247 35.6
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-27 127.5 205 40.5
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.1e-23 113.2 236 35.6
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 5.2e-22 110.2 148 42.6
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.2e-20 104.8 199 32.7
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.3e-17 94.7 118 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.3e-16 90.5 196 29.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 6.1e-15 86.7 154 37.7
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 8.0e-15 86.3 374 24.3
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 7.5e-13 79.7 76 53.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 6.4e-12 76.6 112 39.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.3e-12 76.3 239 29.7
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 9.2e-11 72.8 82 51.2
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.0e-09 69.3 57 52.6
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.3e-09 68.9 320 23.4
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 5.0e-09 67.0 116 31.9
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-08 65.5 71 47.9
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.5e-08 65.5 174 30.5
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.3e-08 63.9 44 70.5
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 5.2e-06 57.0 149 30.9
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 6.8e-06 56.6 59 50.8


User provided reference genes

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