Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0217771 Rosa chinensis HOM05D003051 ORTHO05D003932 1.0e-38 162.9 80 100.0
Nitab4.5_0001579g0140 Nicotiana tabacum HOM05D003051 ORTHO05D003932 1.9e-21 105.5 79 72.2
RcHm_v2.0_Chr7g0225391 Rosa chinensis HOM05D003051 ORTHO05D003932 4.2e-21 104.4 57 96.5
RcHm_v2.0_Chr6g0308441 Rosa chinensis HOM05D003051 ORTHO05D003932 5.5e-21 104.0 57 94.7
Peaxi162Scf01013g00014 Petunia axillaris HOM05D003051 ORTHO05D003932 9.4e-21 103.2 79 70.9
CAN.G9.7 Capsicum annuum HOM05D003051 ORTHO05D003932 1.2e-20 102.8 79 69.6
FvH4_2g33970 Fragaria vesca HOM05D003051 ORTHO05D003932 1.2e-20 102.8 57 94.7
FAN15G3751 Fragaria x ananassa HOM05D003051 ORTHO05D003932 1.2e-20 102.8 57 94.7
FAN24G2348 Fragaria x ananassa HOM05D003051 ORTHO05D003932 1.2e-20 102.8 57 94.7
FAN27G0244 Fragaria x ananassa HOM05D003051 ORTHO05D003932 1.2e-20 102.8 57 94.7
GSVIVG01000259001 Vitis vinifera HOM05D003051 ORTHO05D003932 1.2e-20 102.8 79 69.6
CAN.G2.17 Capsicum annuum HOM05D003051 ORTHO05D003932 2.1e-20 102.1 79 69.6
Prupe.1G431600 Prunus persica HOM05D003051 ORTHO05D003932 2.7e-20 101.7 57 91.2
Sopen11g010060 Solanum pennellii HOM05D003051 ORTHO05D003932 2.7e-20 101.7 79 69.6
Lj7A426G51 Lonicera japonica HOM05D003051 ORTHO05D003932 4.7e-20 100.9 79 68.4
Actinidia17302 Actinidia chinensis HOM05D003051 ORTHO05D003932 6.1e-20 100.5 78 66.7
Solyc11g019950.2 Solanum lycopersicum HOM05D003051 ORTHO05D003932 6.1e-20 100.5 79 68.4
THA.LOC104807468 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 6.1e-20 100.5 79 68.4
Atru.chr13.2284 Acer truncatum HOM05D003051 ORTHO05D003932 7.9e-20 100.1 79 67.1
CANSAT78G1339 Cannabis sativa HOM05D003051 ORTHO05D003932 7.9e-20 100.1 79 68.4
Cfa006516 Carpinus fangiana HOM05D003051 ORTHO05D003932 7.9e-20 100.1 79 67.1
Haze_04268 Corylus avellana HOM05D003051 ORTHO05D003932 7.9e-20 100.1 79 67.1
Haze_06246 Corylus avellana HOM05D003051 ORTHO05D003932 7.9e-20 100.1 79 67.1
TAR636G2510 Trochodendron aralioides HOM05D003051 ORTHO05D003932 7.9e-20 100.1 79 69.6
CSS0022220 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.0e-19 99.8 79 67.1
Nitab4.5_0002021g0050 Nicotiana tabacum HOM05D003051 ORTHO05D003932 1.0e-19 99.8 79 67.1
Peaxi162Scf00699g00636 Petunia axillaris HOM05D003051 ORTHO05D003932 1.0e-19 99.8 79 68.4
Lalb_Chr14g0368521 Lupinus albus HOM05D003051 ORTHO05D003932 1.4e-19 99.4 57 89.5
Solyc08g066020.3 Solanum lycopersicum HOM05D003051 ORTHO05D003932 1.8e-19 99.0 79 67.1
Sopen08g019680 Solanum pennellii HOM05D003051 ORTHO05D003932 1.8e-19 99.0 79 67.1
PGSC0003DMG400027619 Solanum tuberosum HOM05D003051 ORTHO05D003932 1.8e-19 99.0 79 68.4
CiPaw.09G069100 Carya illinoinensis HOM05D003051 ORTHO05D003932 2.3e-19 98.6 57 87.7
Lalb_Chr22g0354981 Lupinus albus HOM05D003051 ORTHO05D003932 3.0e-19 98.2 57 87.7
Manes.12G080800 Manihot esculenta HOM05D003051 ORTHO05D003932 3.0e-19 98.2 79 64.6
Ciclev10025496m.g Citrus clementina HOM05D003051 ORTHO05D003932 3.9e-19 97.8 79 65.8
Cc08_g11730 Coffea canephora HOM05D003051 ORTHO05D003932 3.9e-19 97.8 57 87.7
Dinv37116 Davidia involucrata HOM05D003051 ORTHO05D003932 3.9e-19 97.8 79 68.4
Lsat_1_v5_gn_5_96860 Lactuca sativa HOM05D003051 ORTHO05D003932 3.9e-19 97.8 79 65.8
Nitab4.5_0000318g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 3.9e-19 97.8 79 65.8
Potri.012G043800 Populus trichocarpa HOM05D003051 ORTHO05D003932 3.9e-19 97.8 79 67.1
Gohir.D10G002000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 5.1e-19 97.4 79 67.1
Gorai.011G002400 Gossypium raimondii HOM05D003051 ORTHO05D003932 5.1e-19 97.4 79 67.1
CDE04G1802 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 6.7e-19 97.1 79 64.6
Dinv36492 Davidia involucrata HOM05D003051 ORTHO05D003932 6.7e-19 97.1 78 67.9
PGR102G2746 Punica granatum HOM05D003051 ORTHO05D003932 6.7e-19 97.1 78 62.8
QL02p004168 Quercus lobata HOM05D003051 ORTHO05D003932 6.7e-19 97.1 79 65.8
Lalb_Chr24g0399381 Lupinus albus HOM05D003051 ORTHO05D003932 8.8e-19 96.7 57 86.0
CSS0023289 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.1e-18 96.3 79 64.6
Gohir.A10G001900 Gossypium hirsutum HOM05D003051 ORTHO05D003932 1.1e-18 96.3 79 65.8
Gohir.A10G159000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 1.1e-18 96.3 79 65.8
Gohir.D10G084100 Gossypium hirsutum HOM05D003051 ORTHO05D003932 1.1e-18 96.3 79 65.8
Gorai.011G091200 Gossypium raimondii HOM05D003051 ORTHO05D003932 1.1e-18 96.3 79 65.8
Lj5g0018018 Lotus japonicus HOM05D003051 ORTHO05D003932 1.1e-18 96.3 79 64.6
MBI18_g02835_MAGBIO Magnolia biondii HOM05D003051 ORTHO05D003932 1.1e-18 96.3 57 84.2
THA.LOC104804240 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 1.1e-18 96.3 79 68.4
vmacro18084 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 1.1e-18 96.3 57 82.5
arahy.Tifrunner.gnm1.ann1.11SE8F Arachis hypogaea HOM05D003051 ORTHO05D003932 1.5e-18 95.9 79 67.1
arahy.Tifrunner.gnm1.ann1.53VZ2L Arachis hypogaea HOM05D003051 ORTHO05D003932 1.5e-18 95.9 79 64.6
arahy.Tifrunner.gnm1.ann1.GJWA3D Arachis hypogaea HOM05D003051 ORTHO05D003932 1.5e-18 95.9 79 67.1
Thhalv10025064m.g Eutrema salsugineum HOM05D003051 ORTHO05D003932 1.5e-18 95.9 79 65.8
Sabra12G0030700 Salix brachista HOM05D003051 ORTHO05D003932 1.5e-18 95.9 79 67.1
CDE03G0158 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 2.0e-18 95.5 79 62.0
COL.COLO4_31149 Corchorus olitorius HOM05D003051 ORTHO05D003932 2.0e-18 95.5 79 65.8
Duzib235G0371 Durio zibethinus HOM05D003051 ORTHO05D003932 2.0e-18 95.5 79 65.8
Potri.015G034600 Populus trichocarpa HOM05D003051 ORTHO05D003932 2.0e-18 95.5 57 86.0
Aa31LG6G13270 Aethionema arabicum HOM05D003051 ORTHO05D003932 2.6e-18 95.1 79 65.8
MSTRG.20290 Avicennia marina HOM05D003051 ORTHO05D003932 2.6e-18 95.1 79 63.3
CARHR244800 Cardamine hirsuta HOM05D003051 ORTHO05D003932 2.6e-18 95.1 79 65.8
DCAR_020911 Daucus carota HOM05D003051 ORTHO05D003932 2.6e-18 95.1 79 65.8
Sabra15G0028600 Salix brachista HOM05D003051 ORTHO05D003932 2.6e-18 95.1 57 84.2
Sp7g34130 Schrenkiella parvula HOM05D003051 ORTHO05D003932 2.6e-18 95.1 79 65.8
arahy.Tifrunner.gnm1.ann1.QNA1HW Arachis hypogaea HOM05D003051 ORTHO05D003932 3.3e-18 94.7 79 63.3
ClCG08G016130 Citrullus lanatus HOM05D003051 ORTHO05D003932 3.3e-18 94.7 78 64.1
Eucgr.D00310 Eucalyptus grandis HOM05D003051 ORTHO05D003932 3.3e-18 94.7 79 64.6
Lsat_1_v5_gn_8_62240 Lactuca sativa HOM05D003051 ORTHO05D003932 3.3e-18 94.7 79 64.6
Phvul.001G024100 Phaseolus vulgaris HOM05D003051 ORTHO05D003932 3.3e-18 94.7 79 67.1
Rhsim10G0081500 Rhododendron simsii HOM05D003051 ORTHO05D003932 3.3e-18 94.7 57 80.7
Sed0025362 Sechium edule HOM05D003051 ORTHO05D003932 3.3e-18 94.7 78 64.1
TWI63G1017 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 3.3e-18 94.7 79 64.6
vmacro08505 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 3.3e-18 94.7 57 80.7
vmacro22602 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 3.3e-18 94.7 57 80.7
Duzib160G0152 Durio zibethinus HOM05D003051 ORTHO05D003932 4.4e-18 94.4 79 64.6
A03p64250 Brassica napus HOM05D003051 ORTHO05D003932 5.7e-18 94.0 79 64.6
C07p61710 Brassica napus HOM05D003051 ORTHO05D003932 5.7e-18 94.0 79 64.6
BolC7t46596H Brassica oleracea HOM05D003051 ORTHO05D003932 5.7e-18 94.0 79 64.6
BraA03t15496Z Brassica rapa HOM05D003051 ORTHO05D003932 5.7e-18 94.0 79 64.6
Glyma.17G239700 Glycine max HOM05D003051 ORTHO05D003932 5.7e-18 94.0 79 64.6
EL10Ac1g02184 Beta vulgaris HOM05D003051 ORTHO05D003932 7.4e-18 93.6 79 60.8
Cc11_g04320 Coffea canephora HOM05D003051 ORTHO05D003932 7.4e-18 93.6 79 64.6
TAR374G0623 Trochodendron aralioides HOM05D003051 ORTHO05D003932 7.4e-18 93.6 79 62.0
TAR374G0874 Trochodendron aralioides HOM05D003051 ORTHO05D003932 7.4e-18 93.6 79 62.0
AL7G14600 Arabidopsis lyrata HOM05D003051 ORTHO05D003932 9.7e-18 93.2 79 65.8
Thecc.06G056600 Theobroma cacao HOM05D003051 ORTHO05D003932 9.7e-18 93.2 57 82.5
BcaNung00731 Brassica carinata HOM05D003051 ORTHO05D003932 1.3e-17 92.8 57 82.5
A01p02390 Brassica napus HOM05D003051 ORTHO05D003932 1.3e-17 92.8 57 82.5
BolC1t00248H Brassica oleracea HOM05D003051 ORTHO05D003932 1.3e-17 92.8 57 82.5
BraA01t00227Z Brassica rapa HOM05D003051 ORTHO05D003932 1.3e-17 92.8 57 82.5
CSS0032175 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.3e-17 92.8 79 63.3
MELO3C010839.2 Cucumis melo HOM05D003051 ORTHO05D003932 1.3e-17 92.8 78 62.8
CsaV3_2G026490 Cucumis sativus L. HOM05D003051 ORTHO05D003932 1.3e-17 92.8 78 62.8
ECA232G4354 Erigeron canadensis HOM05D003051 ORTHO05D003932 1.3e-17 92.8 57 80.7
Gorai.002G090700 Gossypium raimondii HOM05D003051 ORTHO05D003932 1.3e-17 92.8 79 63.3
TWI18G0714 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 1.3e-17 92.8 79 64.6
Glyma.14G085100 Glycine max HOM05D003051 ORTHO05D003932 1.7e-17 92.4 79 64.6
HanXRQChr05g0134541 Helianthus annuus HOM05D003051 ORTHO05D003932 1.7e-17 92.4 79 63.3
HanXRQChr05g0134611 Helianthus annuus HOM05D003051 ORTHO05D003932 1.7e-17 92.4 79 63.3
Oeu040325.1 Olea europaea HOM05D003051 ORTHO05D003932 2.2e-17 92.0 57 80.7
VMungo0647G0828 Vigna mungo HOM05D003051 ORTHO05D003932 2.2e-17 92.0 79 67.1
AT4G36480 Arabidopsis thaliana HOM05D003051 ORTHO05D003932 2.8e-17 91.7 79 65.8
Carub.0007s0384 Capsella rubella HOM05D003051 ORTHO05D003932 2.8e-17 91.7 79 64.6
SGA_v2.0_scaffold28G11959 Striga asiatica HOM05D003051 ORTHO05D003932 2.8e-17 91.7 79 63.3
TPR.G3789 Trifolium pratense HOM05D003051 ORTHO05D003932 2.8e-17 91.7 79 63.3
Nn3g21075 Nelumbo nucifera HOM05D003051 ORTHO05D003932 3.7e-17 91.3 79 62.0
PGR119G2325 Punica granatum HOM05D003051 ORTHO05D003932 3.7e-17 91.3 78 62.8
unitig_62.g23741 Utricularia gibba HOM05D003051 ORTHO05D003932 3.7e-17 91.3 79 62.0
Aqoxy2G01411 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.8e-17 90.9 79 62.0
HanXRQChr05g0150761 Helianthus annuus HOM05D003051 ORTHO05D003932 4.8e-17 90.9 79 62.0
SalBow5G0877 Salvia bowleyana HOM05D003051 ORTHO05D003932 4.8e-17 90.9 79 60.8
Sc02g0008680 Simmondsia chinensis HOM05D003051 ORTHO05D003932 6.3e-17 90.5 79 58.2
Ca_05631_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 8.2e-17 90.1 79 60.8
Ca_13275_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 8.2e-17 90.1 57 78.9
Os03g0252800 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 8.2e-17 90.1 79 60.8
PSO339G0046 Papaver somniferum HOM05D003051 ORTHO05D003932 8.2e-17 90.1 79 59.5
PSO384G5107 Papaver somniferum HOM05D003051 ORTHO05D003932 8.2e-17 90.1 79 59.5
Ah.01g003510 Amaranthus hybridus HOM05D003051 ORTHO05D003932 1.1e-16 89.7 79 59.5
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 1.1e-16 89.7 79 62.0
Psat2g055640 Pisum sativum HOM05D003051 ORTHO05D003932 1.1e-16 89.7 79 60.8
Medtr5g072020 Medicago truncatula HOM05D003051 ORTHO05D003932 2.4e-16 88.6 79 59.5
TPR.G18000 Trifolium pratense HOM05D003051 ORTHO05D003932 2.4e-16 88.6 79 60.8
Zm00001eb089170 Zea mays HOM05D003051 ORTHO05D003932 3.1e-16 88.2 79 59.5
Zm00001eb398510 Zea mays HOM05D003051 ORTHO05D003932 3.1e-16 88.2 79 59.5
HPP92_014444 Vanilla planifolia HOM05D003051 ORTHO05D003932 4.1e-16 87.8 79 59.5
Medtr1g018970 Medicago truncatula HOM05D003051 ORTHO05D003932 5.3e-16 87.4 79 60.8
Os02g0806900 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 5.3e-16 87.4 79 59.5
Zm00001eb010860 Zea mays HOM05D003051 ORTHO05D003932 5.3e-16 87.4 79 59.5
CSS0013516 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 7.0e-16 87.0 95 52.6
AUR62035016 Chenopodium quinoa HOM05D003051 ORTHO05D003932 7.0e-16 87.0 79 60.8
AUR62041898 Chenopodium quinoa HOM05D003051 ORTHO05D003932 7.0e-16 87.0 79 60.8
Migut.B00582 Erythranthe guttata HOM05D003051 ORTHO05D003932 7.0e-16 87.0 57 73.7
Medtr3g054030 Medicago truncatula HOM05D003051 ORTHO05D003932 7.0e-16 87.0 79 58.2
SGA_v2.0_scaffold83G26334 Striga asiatica HOM05D003051 ORTHO05D003932 9.1e-16 86.7 57 77.2
Hund22046 Selenicereus undatus HOM05D003051 ORTHO05D003932 1.2e-15 86.3 79 58.2
Zm00001eb178340 Zea mays HOM05D003051 ORTHO05D003932 1.2e-15 86.3 79 58.2
ATR0222G029 Amborella trichopoda HOM05D003051 ORTHO05D003932 2.0e-15 85.5 57 71.9
MD15G1077700 Malus domestica HOM05D003051 ORTHO05D003932 2.6e-15 85.1 81 61.7
MD08G1095600 Malus domestica HOM05D003051 ORTHO05D003932 4.5e-15 84.3 81 60.5
Os10g0189600 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 1.0e-14 83.2 79 57.0
Zm00001eb308510 Zea mays HOM05D004591 ORTHO05D005749 1.0e-14 83.2 79 57.0
FvH4_7g01910 Fragaria vesca HOM05D003051 ORTHO05D003932 2.2e-14 82.0 57 78.9
FAN03G2064 Fragaria x ananassa HOM05D003051 ORTHO05D003932 5.0e-14 80.9 57 78.9
AUR62006503 Chenopodium quinoa HOM05D003051 ORTHO05D003932 8.5e-14 80.1 57 71.9
C01p02600 Brassica napus HOM05D003051 ORTHO05D003932 4.2e-13 77.8 57 73.7
SEGI_33366 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 4.7e-12 74.3 59 64.4
CSS0004660 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 4.0e-11 71.2 79 55.7
SEGI_13307 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 4.0e-11 71.2 59 59.3
SMO361G0305 Selaginella moellendorffii HOM05D003051 ORTHO05D003932 1.5e-10 69.3 59 61.0
Mapoly0025s0004 Marchantia polymorpha HOM05D003051 ORTHO05D003932 3.3e-10 68.2 59 57.6
Pp3c7_5350 Physcomitrium patens HOM05D003051 ORTHO05D003932 4.4e-10 67.8 58 56.9
AagrBONN_evm.TU.Sc2ySwM_362.1674 Anthoceros agrestis HOM05D003051 ORTHO05D003932 7.5e-10 67.0 79 44.3
CSS0012370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 2.2e-09 65.5 79 50.6
CSS0004006 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 1.8e-08 62.4 79 49.4
Cpa.g.sc7.66 Carica papaya HOM05D003051 ORTHO05D003932 5.0e-06 54.3 32 87.5


User provided reference genes

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