Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0194881 Rosa chinensis HOM05D001197 ORTHO05D008702 9.6e-42 172.9 80 100.0
RcHm_v2.0_Chr1g0332801 Rosa chinensis HOM05D001197 ORTHO05D008702 9.4e-21 103.2 80 68.8
FvH4_7g05760 Fragaria vesca HOM05D001197 ORTHO05D008702 5.7e-18 94.0 80 63.8
FAN01G1755 Fragaria x ananassa HOM05D001197 ORTHO05D008702 5.7e-18 94.0 80 63.8
FAN06G1201 Fragaria x ananassa HOM05D001197 ORTHO05D008702 5.7e-18 94.0 80 63.8
FAN03G2112 Fragaria x ananassa HOM05D001197 ORTHO05D008702 1.3e-17 92.8 80 62.5
FAN10G3262 Fragaria x ananassa HOM05D001197 ORTHO05D008702 1.4e-16 89.4 80 61.2
Ciclev10031772m.g Citrus clementina HOM05D001197 ORTHO05D008702 5.0e-14 80.9 88 48.9
QL04p043550 Quercus lobata HOM05D001197 ORTHO05D008702 1.9e-13 79.0 88 47.7
Actinidia18590 Actinidia chinensis HOM05D001197 ORTHO05D008702 3.2e-13 78.2 88 48.9
Prupe.2G080000 Prunus persica HOM05D001197 ORTHO05D008702 9.4e-13 76.6 87 49.4
Sabra10G0185700 Salix brachista HOM05D001197 ORTHO05D008702 2.1e-12 75.5 87 48.3
Lj2C31G3 Lonicera japonica HOM05D001197 ORTHO05D008702 2.7e-12 75.1 88 44.3
Dinv02034 Davidia involucrata HOM05D000097 ORTHO05D000041 4.7e-12 74.3 88 46.6
Atru.chr12.997 Acer truncatum HOM05D001197 ORTHO05D008702 8.0e-12 73.6 88 44.3
MD02G1255600 Malus domestica HOM05D001197 ORTHO05D008702 1.0e-11 73.2 87 48.3
Dinv02037 Davidia involucrata HOM05D001197 ORTHO05D008702 1.8e-11 72.4 88 45.5
Hma1.2p1_1064F.1_g253640 Hydrangea macrophylla HOM05D001197 ORTHO05D008702 1.8e-11 72.4 88 44.3
SGA_v2.0_scaffold7G03940 Striga asiatica HOM05D001197 ORTHO05D008702 2.3e-11 72.0 91 44.0
Ca_10508_v3 Cicer arietinum L. HOM05D001197 ORTHO05D008702 3.0e-11 71.6 83 44.6
Hma1.2p1_0246F.1_g101620 Hydrangea macrophylla HOM05D001197 ORTHO05D008702 3.0e-11 71.6 87 43.7
Gohir.A10G197850 Gossypium hirsutum HOM05D000001 ORTHO05D008702 4.0e-11 71.2 84 42.9
Dinv06778 Davidia involucrata HOM05D001197 ORTHO05D008702 5.2e-11 70.9 88 45.5
Lj5g0027704 Lotus japonicus HOM05D001197 ORTHO05D008702 5.2e-11 70.9 88 43.2
Gohir.D10G204950 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.1e-10 69.7 84 41.7
DCAR_028401 Daucus carota HOM05D001197 ORTHO05D008702 1.5e-10 69.3 88 43.2
Manes.10G057900 Manihot esculenta HOM05D001197 ORTHO05D008702 1.5e-10 69.3 88 43.2
Oeu030505.1 Olea europaea HOM05D001197 ORTHO05D008702 1.5e-10 69.3 88 42.0
Phvul.007G103400 Phaseolus vulgaris HOM05D001197 ORTHO05D008702 1.5e-10 69.3 88 44.3
Potri.008G022200 Populus trichocarpa HOM05D001197 ORTHO05D008702 1.5e-10 69.3 87 43.7
Potri.010G237200 Populus trichocarpa HOM05D001197 ORTHO05D008702 1.5e-10 69.3 87 46.0
QL04p077986 Quercus lobata HOM05D001197 ORTHO05D008702 1.5e-10 69.3 88 43.2
CSS0048572 Camellia sinensis var. sinensis HOM05D001197 ORTHO05D008702 2.0e-10 68.9 88 44.3
Haze_02528 Corylus avellana HOM05D001197 ORTHO05D008702 2.0e-10 68.9 88 40.9
Gorai.011G229900 Gossypium raimondii HOM05D000001 ORTHO05D000003 2.0e-10 68.9 84 41.7
VMungo0720G1910 Vigna mungo HOM05D001197 ORTHO05D008702 2.6e-10 68.6 88 46.6
COL.COLO4_00312 Corchorus olitorius HOM05D001197 ORTHO05D008702 3.3e-10 68.2 83 44.6
Migut.F00903 Erythranthe guttata HOM05D001197 ORTHO05D008702 3.3e-10 68.2 87 42.5
Lalb_Chr02g0151701 Lupinus albus HOM05D001197 ORTHO05D008702 3.3e-10 68.2 88 43.2
CiPaw.14G032500 Carya illinoinensis HOM05D001197 ORTHO05D008702 4.4e-10 67.8 78 44.9
MSTRG.27530 Avicennia marina HOM05D001197 ORTHO05D008702 5.7e-10 67.4 88 42.0
TWI38G2166 Tripterygium wilfordii HOM05D001197 ORTHO05D008702 5.7e-10 67.4 87 43.7
Thecc.10G108300 Theobroma cacao HOM05D001197 ORTHO05D008702 7.5e-10 67.0 88 39.8
Duzib128G1987 Durio zibethinus HOM05D001197 ORTHO05D008702 9.7e-10 66.6 88 42.0
HanXRQChr08g0217801 Helianthus annuus HOM05D001197 ORTHO05D008702 1.3e-09 66.2 83 43.4
Rhsim03G0101200 Rhododendron simsii HOM05D001197 ORTHO05D008702 2.8e-09 65.1 87 42.5
CiPaw.12G015900 Carya illinoinensis HOM05D001197 ORTHO05D008702 3.7e-09 64.7 79 45.6
GSVIVG01011252001 Vitis vinifera HOM05D001197 ORTHO05D008702 3.7e-09 64.7 90 40.0
ClCG08G008180 Citrullus lanatus HOM05D001197 ORTHO05D008702 6.3e-09 63.9 88 42.0
Cpa.g.c32761 Carica papaya HOM05D001197 ORTHO05D008702 8.2e-09 63.5 88 42.0
Glyma.20G187000 Glycine max HOM05D001197 ORTHO05D008702 1.4e-08 62.8 88 39.8
RcHm_v2.0_Chr1g0338951 Rosa chinensis HOM05D001197 ORTHO05D008702 1.4e-08 62.8 79 44.3
RcHm_v2.0_Chr1g0343161 Rosa chinensis HOM05D001197 ORTHO05D008702 1.4e-08 62.8 79 44.3
Nn6g34956 Nelumbo nucifera HOM05D001197 ORTHO05D008702 2.4e-08 62.0 87 43.7
THA.LOC104810247 Tarenaya hassleriana HOM05D001197 ORTHO05D008702 2.4e-08 62.0 79 43.0
TAR623G1766 Trochodendron aralioides HOM05D001197 ORTHO05D008702 2.4e-08 62.0 66 50.0
MELO3C019891.2 Cucumis melo HOM05D001197 ORTHO05D008702 3.1e-08 61.6 88 38.6
PGSC0003DMG400019468 Solanum tuberosum HOM05D001197 ORTHO05D008702 3.1e-08 61.6 88 36.4
CsaV3_6G004150 Cucumis sativus L. HOM05D001197 ORTHO05D008702 5.3e-08 60.8 88 38.6
Sc06g0002260 Simmondsia chinensis HOM05D001197 ORTHO05D008702 5.3e-08 60.8 82 42.7
AUR62002954 Chenopodium quinoa HOM05D001197 ORTHO05D008702 7.0e-08 60.5 81 44.4
Solyc11g007160.2 Solanum lycopersicum HOM05D001197 ORTHO05D008702 7.0e-08 60.5 88 36.4
Sopen11g003080 Solanum pennellii HOM05D001197 ORTHO05D008702 7.0e-08 60.5 88 37.5
Aqoxy2G01237 Aquilegia oxysepala HOM05D001197 ORTHO05D008702 9.1e-08 60.1 66 47.0
AUR62007759 Chenopodium quinoa HOM05D001197 ORTHO05D008702 1.6e-07 59.3 81 44.4
Haze_02531 Corylus avellana HOM05D001197 ORTHO05D008702 1.6e-07 59.3 68 42.6
EL10Ac6g14541 Beta vulgaris HOM05D001197 ORTHO05D008702 2.0e-07 58.9 89 39.3
ECA233G1672 Erigeron canadensis HOM05D001197 ORTHO05D008702 2.7e-07 58.5 77 45.5
PSO339G3256 Papaver somniferum HOM05D001197 ORTHO05D008702 2.7e-07 58.5 66 47.0
Aqoxy5G00393 Aquilegia oxysepala HOM05D001197 ORTHO05D008702 3.5e-07 58.2 87 39.1
QL04p044720 Quercus lobata HOM05D001197 ORTHO05D008702 3.5e-07 58.2 88 38.6
Peaxi162Scf00173g00825 Petunia axillaris HOM05D001197 ORTHO05D008702 4.5e-07 57.8 70 38.6
Nitab4.5_0001437g0210 Nicotiana tabacum HOM05D001197 ORTHO05D008702 7.7e-07 57.0 88 33.0
QL08p060742 Quercus lobata HOM05D001197 ORTHO05D008702 7.7e-07 57.0 88 37.5
Sed0013914 Sechium edule HOM05D001197 ORTHO05D008702 7.7e-07 57.0 88 37.5
PSO478G4134 Papaver somniferum HOM05D001197 ORTHO05D008702 1.3e-06 56.2 66 48.5
CARHR096810 Cardamine hirsuta HOM05D001197 ORTHO05D008702 1.7e-06 55.8 79 39.2
PSO384G1608 Papaver somniferum HOM05D001197 ORTHO05D008702 2.2e-06 55.5 66 45.5
Nitab4.5_0012407g0010 Nicotiana tabacum HOM05D001197 ORTHO05D008702 3.8e-06 54.7 88 34.1
unitig_899.g14476 Utricularia gibba HOM05D001197 ORTHO05D008702 5.0e-06 54.3 86 36.0


User provided reference genes

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