Gene: Sopen11g003080

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g003080
  • Transcript Identifier Sopen11g003080.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 1685199-1687378 : positive

Gene Family Information

  • ID HOM05D001197
  • #Genes/#Species 523/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g003080.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016554
IEA
InterProcytidine to uridine editing
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G20930
GO:1900871
ISO
PLAZA Integrative Orthologychloroplast mRNA modification Zm00001eb253560

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT3G20930
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G20930
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G20930

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR039206 MORF/ORRM1/DAG-like
IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)