Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0189461 Rosa chinensis HOM05D004445 ORTHO05D005578 1.9e-43 178.7 85 100.0
FvH4_1g00440 Fragaria vesca HOM05D004445 ORTHO05D005578 1.4e-14 82.8 43 93.0
FAN23G0186 Fragaria x ananassa HOM05D004445 ORTHO05D005578 1.4e-14 82.8 43 93.0
FAN26G2197 Fragaria x ananassa HOM05D004445 ORTHO05D005578 1.4e-14 82.8 43 93.0
FAN28G1098 Fragaria x ananassa HOM05D004445 ORTHO05D005578 1.4e-14 82.8 43 93.0
RcHm_v2.0_Chr2g0084951 Rosa chinensis HOM05D004445 ORTHO05D005578 1.4e-14 82.8 43 93.0
Eucgr.G01588 Eucalyptus grandis HOM05D004445 ORTHO05D005578 1.3e-12 76.3 43 83.7
Eucgr.G01594 Eucalyptus grandis HOM05D004445 ORTHO05D005578 1.3e-12 76.3 43 83.7
Eucgr.G01595 Eucalyptus grandis HOM05D004445 ORTHO05D005578 1.3e-12 76.3 43 83.7
Eucgr.L00039 Eucalyptus grandis HOM05D004445 ORTHO05D005578 1.3e-12 76.3 43 83.7
Lj3g0027067 Lotus japonicus HOM05D004445 ORTHO05D005578 2.9e-12 75.1 40 87.5
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 3.8e-12 74.7 44 86.4
Cpa.g.sc601.1 Carica papaya HOM05D004445 ORTHO05D005578 8.5e-12 73.6 43 86.0
Ca_03838_v3 Cicer arietinum L. HOM05D004445 ORTHO05D005578 8.5e-12 73.6 40 85.0
Nn7g38180 Nelumbo nucifera HOM05D004445 ORTHO05D005578 8.5e-12 73.6 42 83.3
Psat7g164240 Pisum sativum HOM05D004445 ORTHO05D005578 8.5e-12 73.6 40 85.0
THA.LOC104805002 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 8.5e-12 73.6 43 86.0
EL10Ac3g06124 Beta vulgaris HOM05D004445 ORTHO05D005578 1.1e-11 73.2 43 81.4
MD02G1003600 Malus domestica HOM05D004445 ORTHO05D005578 1.1e-11 73.2 43 83.7
MD15G1146900 Malus domestica HOM05D004445 ORTHO05D005578 1.1e-11 73.2 43 83.7
Prupe.7G267700 Prunus persica HOM05D004445 ORTHO05D005578 1.1e-11 73.2 43 83.7
BcaB02g08208 Brassica carinata HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 81.4
BcaC02g10088 Brassica carinata HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 81.4
C04p32900 Brassica napus HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 81.4
BolC4t24853H Brassica oleracea HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 81.4
Duzib268G1882 Durio zibethinus HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 86.0
Gohir.A09G213620 Gossypium hirsutum HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 86.0
Gohir.D09G212900 Gossypium hirsutum HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 86.0
Gorai.006G232700 Gossypium raimondii HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 86.0
Peaxi162Scf00003g04837 Petunia axillaris HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 86.0
PGSC0003DMG400008371 Solanum tuberosum HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 86.0
Thecc.04G161800 Theobroma cacao HOM05D004445 ORTHO05D005578 1.4e-11 72.8 43 86.0
Aa31LG1G25520 Aethionema arabicum HOM05D004445 ORTHO05D005578 1.9e-11 72.4 43 86.0
A04p02010 Brassica napus HOM05D004445 ORTHO05D005578 1.9e-11 72.4 43 81.4
BraA04t15926Z Brassica rapa HOM05D004445 ORTHO05D005578 1.9e-11 72.4 43 81.4
FvH4_4g16190 Fragaria vesca HOM05D004445 ORTHO05D005578 1.9e-11 72.4 43 83.7
arahy.Tifrunner.gnm1.ann1.H8LWLB Arachis hypogaea HOM05D004445 ORTHO05D005578 2.5e-11 72.0 46 80.4
arahy.Tifrunner.gnm1.ann1.PL7ZZZ Arachis hypogaea HOM05D004445 ORTHO05D005578 2.5e-11 72.0 46 80.4
Cc03_g15060 Coffea canephora HOM05D004445 ORTHO05D005578 2.5e-11 72.0 43 83.7
DCAR_027508 Daucus carota HOM05D004445 ORTHO05D005578 2.5e-11 72.0 43 83.7
Eucgr.G01590 Eucalyptus grandis HOM05D004445 ORTHO05D005578 2.5e-11 72.0 43 83.7
Eucgr.L00030 Eucalyptus grandis HOM05D004445 ORTHO05D005578 2.5e-11 72.0 43 83.7
Nitab4.5_0000812g0140 Nicotiana tabacum HOM05D004445 ORTHO05D005578 2.5e-11 72.0 43 83.7
Nitab4.5_0006279g0040 Nicotiana tabacum HOM05D004445 ORTHO05D005578 2.5e-11 72.0 43 83.7
PGR042G3106 Punica granatum HOM05D004445 ORTHO05D005578 2.5e-11 72.0 43 83.7
CAN.G960.57 Capsicum annuum HOM05D004445 ORTHO05D005578 3.2e-11 71.6 43 83.7
Actinidia11436 Actinidia chinensis HOM05D004445 ORTHO05D005578 4.2e-11 71.2 43 83.7
Aqoxy5G03981 Aquilegia oxysepala HOM05D004445 ORTHO05D005578 4.2e-11 71.2 41 80.5
CSS0046632 Camellia sinensis var. sinensis HOM05D004445 ORTHO05D005578 4.2e-11 71.2 43 83.7
Eucgr.D00038 Eucalyptus grandis HOM05D004445 ORTHO05D005578 4.2e-11 71.2 43 83.7
Manes.05G137535 Manihot esculenta HOM05D004445 ORTHO05D005578 4.2e-11 71.2 43 83.7
THA.LOC104802338 Tarenaya hassleriana HOM05D004445 ORTHO05D005578 4.2e-11 71.2 43 83.7
AL4G42690 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 5.5e-11 70.9 43 81.4
AL5G41860 Arabidopsis lyrata HOM05D004445 ORTHO05D005578 5.5e-11 70.9 43 83.7
AT2G43810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 5.5e-11 70.9 43 81.4
CANSAT54G1898 Cannabis sativa HOM05D004445 ORTHO05D005578 5.5e-11 70.9 43 83.7
Carub.0005s2653 Capsella rubella HOM05D004445 ORTHO05D005578 5.5e-11 70.9 43 83.7
Ciclev10023071m.g Citrus clementina HOM05D004445 ORTHO05D005578 5.5e-11 70.9 39 84.6
Thhalv10006338m.g Eutrema salsugineum HOM05D004445 ORTHO05D005578 5.5e-11 70.9 43 83.7
HanXRQChr12g0372591 Helianthus annuus HOM05D004445 ORTHO05D005578 5.5e-11 70.9 45 80.0
Hma1.2p1_0108F.1_g051900 Hydrangea macrophylla HOM05D004445 ORTHO05D005578 5.5e-11 70.9 43 83.7
Potri.008G078400 Populus trichocarpa HOM05D004445 ORTHO05D005578 5.5e-11 70.9 39 84.6
GSVIVG01038197001 Vitis vinifera HOM05D004445 ORTHO05D005578 5.5e-11 70.9 39 84.6
Ah.07g203020 Amaranthus hybridus HOM05D004445 ORTHO05D005578 7.2e-11 70.5 40 80.0
CiPaw.01G199100 Carya illinoinensis HOM05D004445 ORTHO05D005578 7.2e-11 70.5 43 81.4
COL.COLO4_03308 Corchorus olitorius HOM05D004445 ORTHO05D005578 7.2e-11 70.5 43 83.7
COL.COLO4_25170 Corchorus olitorius HOM05D004445 ORTHO05D005578 7.2e-11 70.5 43 83.7
Haze_11169 Corylus avellana HOM05D004445 ORTHO05D005578 7.2e-11 70.5 43 81.4
Dinv18304 Davidia involucrata HOM05D004445 ORTHO05D005578 7.2e-11 70.5 43 83.7
Potri.010G178700 Populus trichocarpa HOM05D004445 ORTHO05D005578 7.2e-11 70.5 40 82.5
Manes.12G001100 Manihot esculenta HOM05D004445 ORTHO05D005578 9.4e-11 70.1 39 84.6
Sp5g03330 Schrenkiella parvula HOM05D004445 ORTHO05D005578 9.4e-11 70.1 43 81.4
Peaxi162Scf00483g00211 Petunia axillaris HOM05D004445 ORTHO05D005578 1.2e-10 69.7 43 81.4
CDE06G1144 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 1.6e-10 69.3 43 76.7
ClCG11G000770 Citrullus lanatus HOM05D004445 ORTHO05D005578 1.6e-10 69.3 39 82.1
MELO3C022586.2 Cucumis melo HOM05D004445 ORTHO05D005578 1.6e-10 69.3 39 82.1
CsaV3_5G012480 Cucumis sativus L. HOM05D004445 ORTHO05D005578 1.6e-10 69.3 39 82.1
HanXRQChr14g0449021 Helianthus annuus HOM05D004445 ORTHO05D005578 1.6e-10 69.3 46 78.3
QL07p046700 Quercus lobata HOM05D004445 ORTHO05D005578 1.6e-10 69.3 43 79.1
Rhsim02G0086200 Rhododendron simsii HOM05D004445 ORTHO05D005578 1.6e-10 69.3 43 76.7
Sed0015212 Sechium edule HOM05D004445 ORTHO05D005578 1.6e-10 69.3 39 82.1
vmacro15702 Vaccinium macrocarpon HOM05D004445 ORTHO05D005578 1.6e-10 69.3 45 73.3
CARHR170150 Cardamine hirsuta HOM05D004445 ORTHO05D005578 2.1e-10 68.9 40 85.0
Glyma.09G262700 Glycine max HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
Glyma.18G229600 Glycine max HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
Gohir.A02G007400 Gossypium hirsutum HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
Gohir.D02G007200 Gossypium hirsutum HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
Gorai.005G008600 Gossypium raimondii HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
Medtr4g080300 Medicago truncatula HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
Phvul.008G068400 Phaseolus vulgaris HOM05D004445 ORTHO05D005578 2.1e-10 68.9 41 82.9
Solyc10g078450.2 Solanum lycopersicum HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 86.0
Sopen10g029110 Solanum pennellii HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 86.0
TAR365G0334 Trochodendron aralioides HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
TAR636G2830 Trochodendron aralioides HOM05D004445 ORTHO05D005578 2.1e-10 68.9 43 81.4
Aa31LG10G14060 Aethionema arabicum HOM05D004445 ORTHO05D005578 2.7e-10 68.6 43 81.4
Ah.13g073310 Amaranthus hybridus HOM05D004445 ORTHO05D005578 2.7e-10 68.6 36 88.9
Cfa008488 Carpinus fangiana HOM05D004445 ORTHO05D005578 2.7e-10 68.6 43 79.1
CiPaw.02G123500 Carya illinoinensis HOM05D004445 ORTHO05D005578 2.7e-10 68.6 43 79.1
CDE02G4113 Ceratophyllum demersum HOM05D004445 ORTHO05D005578 2.7e-10 68.6 43 76.7
Oeu022452.1 Olea europaea HOM05D004445 ORTHO05D005578 2.7e-10 68.6 43 81.4
Atru.chr3.1946 Acer truncatum HOM05D004445 ORTHO05D005578 3.6e-10 68.2 44 77.3
AT3G59810 Arabidopsis thaliana HOM05D004445 ORTHO05D005578 3.6e-10 68.2 43 81.4
A09p52090 Brassica napus HOM05D004445 ORTHO05D005578 3.6e-10 68.2 44 79.5
BraA09t40641Z Brassica rapa HOM05D004445 ORTHO05D005578 3.6e-10 68.2 44 79.5
Duzib151G0738 Durio zibethinus HOM05D004445 ORTHO05D005578 3.6e-10 68.2 43 81.4
BcaC08g45011 Brassica carinata HOM05D004445 ORTHO05D005578 4.6e-10 67.8 43 79.1
A07p24840 Brassica napus HOM05D004445 ORTHO05D005578 4.6e-10 67.8 43 79.1
C06p26430 Brassica napus HOM05D004445 ORTHO05D005578 4.6e-10 67.8 43 79.1
BolC6t37806H Brassica oleracea HOM05D004445 ORTHO05D005578 4.6e-10 67.8 43 79.1
BraA07t30128Z Brassica rapa HOM05D004445 ORTHO05D005578 4.6e-10 67.8 43 79.1
AUR62002431 Chenopodium quinoa HOM05D004445 ORTHO05D005578 4.6e-10 67.8 39 79.5
Sabra08G0058200 Salix brachista HOM05D004445 ORTHO05D005578 6.1e-10 67.4 35 91.4
Sc13g0007390 Simmondsia chinensis HOM05D004445 ORTHO05D005578 6.1e-10 67.4 42 81.0
AUR62023757 Chenopodium quinoa HOM05D004445 ORTHO05D005578 7.9e-10 67.0 39 79.5
Sabra10G0137100 Salix brachista HOM05D004445 ORTHO05D005578 7.9e-10 67.0 41 78.0
arahy.Tifrunner.gnm1.ann1.I91R84 Arachis hypogaea HOM05D004445 ORTHO05D005578 1.0e-09 66.6 48 72.9
arahy.Tifrunner.gnm1.ann1.Y7N0XK Arachis hypogaea HOM05D004445 ORTHO05D005578 1.0e-09 66.6 48 72.9
Rhsim02G0086900 Rhododendron simsii HOM05D004445 ORTHO05D005578 1.0e-09 66.6 39 82.1
BcaB02g07770 Brassica carinata HOM05D004445 ORTHO05D005578 1.8e-09 65.9 44 77.3
Lalb_Chr08g0242021 Lupinus albus HOM05D004445 ORTHO05D005578 1.8e-09 65.9 40 80.0
Sp4g25890 Schrenkiella parvula HOM05D004445 ORTHO05D005578 1.8e-09 65.9 43 79.1
TWI15G0001 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 1.8e-09 65.9 40 82.5
TWI15G1072 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 1.8e-09 65.9 40 82.5
HPP92_007009 Vanilla planifolia HOM05D004445 ORTHO05D005578 1.8e-09 65.9 48 70.8
SalBow3G0834 Salvia bowleyana HOM05D004445 ORTHO05D005578 2.3e-09 65.5 43 83.7
SalBow4G2087 Salvia bowleyana HOM05D004445 ORTHO05D005578 2.3e-09 65.5 43 83.7
Carub.0004s2635 Capsella rubella HOM05D004445 ORTHO05D005578 3.0e-09 65.1 43 79.1
AagrBONN_evm.TU.Sc2ySwM_228.4655 Anthoceros agrestis HOM05D004445 ORTHO05D005578 3.9e-09 64.7 43 74.4
Mapoly0124s0040 Marchantia polymorpha HOM05D004445 ORTHO05D005578 3.9e-09 64.7 44 75.0
TWI60G1208 Tripterygium wilfordii HOM05D004445 ORTHO05D005578 3.9e-09 64.7 40 80.0
Zm00001eb421160 Zea mays HOM05D004445 ORTHO05D005578 3.9e-09 64.7 46 69.6
unitig_699.g19769 Utricularia gibba HOM05D004445 ORTHO05D005578 6.7e-09 63.9 43 72.1
Migut.F00861 Erythranthe guttata HOM05D004445 ORTHO05D005578 8.8e-09 63.5 43 74.4
Lalb_Chr13g0291081 Lupinus albus HOM05D004445 ORTHO05D005578 1.5e-08 62.8 40 77.5
SMO197G0107 Selaginella moellendorffii HOM05D004445 ORTHO05D005578 1.9e-08 62.4 43 69.8
ATR0171G021 Amborella trichopoda HOM05D004445 ORTHO05D005578 2.5e-08 62.0 34 82.4
Pp3c18_1280 Physcomitrium patens HOM05D004445 ORTHO05D005578 2.5e-08 62.0 34 82.4
TPR.G30476 Trifolium pratense HOM05D004445 ORTHO05D005578 2.5e-08 62.0 40 77.5
ECA238G2251 Erigeron canadensis HOM05D004445 ORTHO05D005578 5.7e-08 60.8 34 82.4
CBR_g23546 Chara braunii HOM05D004445 ORTHO05D005578 7.4e-08 60.5 32 87.5
MCO16G126 Micromonas commoda HOM05D004445 ORTHO05D005578 7.4e-08 60.5 34 79.4
BcaC06g32829 Brassica carinata HOM05D000538 ORTHO05D000614 9.7e-08 60.1 30 90.0
BcaC06g32832 Brassica carinata HOM05D004445 ORTHO05D000125 9.7e-08 60.1 30 90.0
PSO170G5655 Papaver somniferum HOM05D004445 ORTHO05D005578 9.7e-08 60.1 32 84.4
PSO357G0486 Papaver somniferum HOM05D004445 ORTHO05D005578 9.7e-08 60.1 32 84.4
Pp3c22_1090 Physcomitrium patens HOM05D004445 ORTHO05D005578 1.3e-07 59.7 44 68.2
Os02g0510100 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 3.7e-07 58.2 30 86.7
Os04g0388900 Oryza sativa ssp. japonica HOM05D004445 ORTHO05D005578 4.8e-07 57.8 46 63.0
MBI17_g46128_MAGBIO Magnolia biondii HOM05D004445 ORTHO05D005578 8.2e-07 57.0 38 76.3
Cre03.g151750 Chlamydomonas reinhardtii HOM05D004445 ORTHO05D005578 1.8e-06 55.8 43 58.1


User provided reference genes

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