Gene: Pp3c18_1280

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c18_1280
  • Transcript Identifier Pp3c18_1280V3.2
  • Gene Type Coding gene
  • Location Chr18 : 1227146-1228522 : negative

Gene Family Information

  • ID HOM05D004445
  • #Genes/#Species 161/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c18_1280V3.2
  • pacid 32983423
  • alias Phypa_160036
  • alias Pp1s17_388V6
  • alias Phpat.018G002300
  • uniprot A9RMX0

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030490
IBA
GOA Databasematuration of SSU-rRNA
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G43810
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G59810
GO:0003723
IBA
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005732
IBA
GOA Databasesno(s)RNA-containing ribonucleoprotein complex
GO:0000932
IBA
GOA DatabaseP-body
GO:0005730
IBA
GOA Databasenucleolus
GO:0005688
IBA
GOA DatabaseU6 snRNP
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR016487 Sm-like protein Lsm6/SmF
IPR010920 LSM domain superfamily
Mapman id Description
16.2.3.6 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm6