Gene: Solyc10g078450.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g078450.2
  • Transcript Identifier Solyc10g078450.2.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 59394193-59395462 : positive

Gene Family Information

  • ID HOM05D004445
  • #Genes/#Species 161/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g078450.2.1
  • uniprot A0A3Q7IJG1
  • gene_id Solyc10g078450

Descriptions

  • Description Small nuclear ribonucleoprotein family protein (AHRD V3.3 *** A0A2U1N6A1_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030490
IBA
GOA Databasematuration of SSU-rRNA
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G43810
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G59810
GO:0003723
IBA
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005732
IBA
GOA Databasesno(s)RNA-containing ribonucleoprotein complex
GO:0000932
IBA
GOA DatabaseP-body
GO:0005730
IBA
GOA Databasenucleolus
GO:0005688
IBA
GOA DatabaseU6 snRNP
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016487 Sm-like protein Lsm6/SmF
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
Mapman id Description
16.2.3.6 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm6