Gene: AT3G59810

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G59810
  • Transcript Identifier AT3G59810.1
  • Gene Type Coding gene
  • Location Chr3 : 22096841-22097666 : positive

Gene Family Information

  • ID HOM05D004445
  • #Genes/#Species 161/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G59810.1
  • symbol LSM6A
  • full_name SM-like 6A
  • uniprot Q9M1Z3

Descriptions

  • Description Small nuclear ribonucleoprotein family protein
  • Computational description Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G43810.2); Has 1159 Blast hits to 1159 proteins in 301 species: Archae - 313; Bacteria - 0; Metazoa - 297; Fungi - 260; Plants - 135; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0030490
IBA
Gene Ontologymaturation of SSU-rRNA1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
IBA
Gene OntologyP-body1
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005688
IBA
Gene OntologyU6 snRNP1
GO:0005732
IBA
Gene Ontologysno(s)RNA-containing ribonucleoprotein complex1
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0005730
IBA
Gene Ontologynucleolus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR016487 Sm-like protein Lsm6/SmF
Mapman id Description
16.2.3.6 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm6