Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 8.1e-263 909.8 449 100.0
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.4e-251 871.7 449 94.7
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 6.0e-250 867.1 449 94.0
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.0e-249 866.3 449 94.4
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.8e-249 865.5 449 94.4
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 8.7e-249 863.2 449 93.3
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.3e-233 812.8 450 89.3
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.1e-232 809.7 450 87.1
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 2.5e-219 765.4 451 82.5
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 4.4e-216 754.6 436 82.8
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 3.7e-215 751.5 451 81.8
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 4.8e-215 751.1 459 80.0
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.4e-214 749.6 459 79.7
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.4e-214 748.8 459 80.0
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 9.1e-214 746.9 486 76.1
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 4.5e-213 744.6 451 80.3
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 7.7e-213 743.8 454 78.4
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 7.7e-213 743.8 450 81.1
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 2.2e-212 742.3 454 79.5
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 1.4e-211 739.6 451 79.4
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 2.7e-210 735.3 451 79.4
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.7e-210 735.3 451 79.4
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.4e-209 733.0 451 78.9
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 3.0e-209 731.9 459 77.1
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 8.8e-209 730.3 436 80.3
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 3.3e-208 728.4 453 78.4
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 2.6e-205 718.8 450 77.1
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 3.5e-205 718.4 450 78.0
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 1.9e-203 712.6 447 76.5
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 6.1e-202 707.6 455 75.4
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.0e-201 706.8 459 77.1
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 3.0e-201 705.3 456 76.3
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 5.7e-200 701.0 460 74.6
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 7.5e-200 700.7 458 75.5
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 9.7e-200 700.3 458 74.2
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.3e-199 699.9 438 77.2
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.3e-199 699.9 450 75.6
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 2.2e-199 699.1 451 76.7
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.8e-199 698.7 454 75.6
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.8e-198 696.0 440 77.3
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.4e-198 695.7 451 75.2
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 4.1e-198 694.9 457 74.2
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 4.1e-198 694.9 436 77.3
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 5.3e-198 694.5 401 84.3
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.2e-197 693.3 451 74.1
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 1.6e-197 693.0 450 74.9
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.0e-196 690.3 456 74.3
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.3e-196 689.9 454 73.8
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 2.2e-196 689.1 453 75.7
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 2.2e-196 689.1 449 74.6
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 5.0e-196 688.0 457 73.3
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 1.1e-195 686.8 449 74.4
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 4.2e-195 684.9 451 73.4
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 1.2e-194 683.3 450 73.6
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.7e-194 682.2 454 73.1
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 1.0e-193 680.2 413 79.9
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 3.0e-193 678.7 452 72.8
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 4.0e-193 678.3 458 72.7
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 4.0e-193 678.3 435 74.7
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 5.2e-193 677.9 452 73.2
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 6.8e-193 677.6 454 72.5
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 1.5e-192 676.4 457 72.2
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 2.0e-192 676.0 454 72.2
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 2.6e-192 675.6 450 72.9
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.7e-191 672.9 453 72.6
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 6.3e-191 671.0 458 72.3
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 6.3e-191 671.0 418 76.8
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 5.4e-190 667.9 456 72.6
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 1.2e-189 666.8 456 71.9
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 4.5e-189 664.8 460 71.7
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 2.3e-188 662.5 515 65.6
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 1.1e-187 660.2 459 71.0
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.6e-186 656.4 456 71.1
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 2.2e-183 646.0 454 70.0
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.8e-182 642.9 454 69.6
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 2.0e-181 639.4 455 70.5
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 7.8e-181 637.5 411 76.2
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 6.6e-180 634.4 456 68.0
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 3.3e-179 632.1 435 73.3
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.1e-178 629.4 383 80.9
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 3.6e-178 628.6 453 68.9
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 6.1e-178 627.9 453 69.3
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 8.0e-178 627.5 454 69.8
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.4e-177 626.7 455 69.7
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 5.2e-177 624.8 454 69.4
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 8.9e-177 624.0 454 69.2
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 2.0e-176 622.9 488 65.6
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 2.6e-176 622.5 455 67.3
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.4e-176 621.7 459 67.5
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 4.1e-174 615.1 385 78.2
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 3.3e-171 605.5 457 64.8
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 7.3e-171 604.4 450 67.8
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.6e-168 595.9 407 71.3
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.4e-166 590.1 452 66.8
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 8.6e-164 580.9 457 63.5
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 6.6e-156 554.7 372 73.9
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.4e-153 547.0 371 75.7
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 2.2e-135 486.5 464 54.1
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 1.2e-133 480.7 458 52.6
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 2.2e-127 459.9 458 56.8
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 2.1e-125 453.4 337 68.0
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 3.0e-124 449.5 299 72.9
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 2.1e-122 443.4 454 48.9
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 4.0e-121 439.1 455 49.9
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 1.5e-112 410.6 311 67.5
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 1.7e-106 390.6 514 42.2
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.1e-102 377.9 386 52.3
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 6.1e-93 345.5 462 42.9
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 9.7e-91 338.2 248 72.6
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 4.5e-80 302.8 207 67.6
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.8e-76 290.8 224 62.5
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 6.1e-69 265.8 442 36.4
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.3e-66 258.1 191 66.0
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 4.1e-41 173.3 107 76.6
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 3.9e-39 166.8 435 28.3
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 6.6e-39 166.0 300 34.3
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 6.9e-20 102.8 121 39.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.9e-10 70.9 327 22.0
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 3.5e-08 63.9 336 22.6
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 4.6e-08 63.5 334 21.9
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 6.0e-08 63.2 146 26.7
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.8e-07 61.6 336 22.6
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.3e-07 61.2 214 25.2
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 3.0e-07 60.8 337 22.3
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 3.9e-07 60.5 128 25.8
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 3.9e-07 60.5 128 25.8
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 8.7e-07 59.3 171 25.1
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 8.7e-07 59.3 128 25.8
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.1e-06 58.9 146 24.7
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.1e-06 58.9 146 24.7
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 1.5e-06 58.5 128 25.0
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 1.5e-06 58.5 128 25.8
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.5e-06 58.5 142 29.6
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 332 20.5
SalBow7G0942 Salvia bowleyana HOM05D001610 ORTHO05D001585 1.5e-06 58.5 250 24.4
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.9e-06 58.2 128 25.0
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 1.9e-06 58.2 169 27.8
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 2.5e-06 57.8 319 21.6
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 3.3e-06 57.4 153 25.5
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 4.3e-06 57.0 243 24.7
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 4.3e-06 57.0 346 22.8
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 5.7e-06 56.6 123 27.6
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 5.7e-06 56.6 118 26.3
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 7.4e-06 56.2 128 25.8
TAR383G0657 Trochodendron aralioides HOM05D003006 ORTHO05D003438 7.4e-06 56.2 185 24.9
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 9.6e-06 55.8 335 23.9
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 9.6e-06 55.8 153 25.5
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 9.6e-06 55.8 413 23.2


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