Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0286201 Rosa chinensis HOM05D006183 ORTHO05D007844 1.8e-47 192.2 94 100.0
FAN15G0492 Fragaria x ananassa HOM05D006183 ORTHO05D007844 2.1e-40 168.7 92 90.2
RcHm_v2.0_Chr6g0286091 Rosa chinensis HOM05D006183 ORTHO05D007844 2.8e-40 168.3 83 98.8
FvH4_2g20290 Fragaria vesca HOM05D006183 ORTHO05D007844 7.9e-35 150.2 77 94.8
FAN24G0209 Fragaria x ananassa HOM05D006183 ORTHO05D007844 7.9e-35 150.2 77 94.8
MD10G1174900 Malus domestica HOM05D006183 ORTHO05D007844 1.0e-34 149.8 88 85.2
ATR0751G065 Amborella trichopoda HOM05D006183 ORTHO05D007844 1.5e-33 146.0 93 75.3
Actinidia30118 Actinidia chinensis HOM05D006183 ORTHO05D007844 2.5e-33 145.2 97 72.2
Prupe.8G213600 Prunus persica HOM05D006183 ORTHO05D007844 2.5e-33 145.2 78 88.5
Hma1.2p1_2051F.1_g312550 Hydrangea macrophylla HOM05D006183 ORTHO05D007844 1.3e-32 142.9 92 78.3
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 2.1e-32 142.1 91 75.8
Nitab4.5_0009671g0010 Nicotiana tabacum HOM05D006183 ORTHO05D007844 3.1e-31 138.3 86 73.3
Solyc06g008110.4 Solanum lycopersicum HOM05D006183 ORTHO05D007844 4.0e-31 137.9 86 75.6
Nitab4.5_0000326g0320 Nicotiana tabacum HOM05D006183 ORTHO05D007844 5.3e-31 137.5 86 73.3
Sopen06g002920 Solanum pennellii HOM05D006183 ORTHO05D007844 6.9e-31 137.1 78 80.8
Rhsim13G0040400 Rhododendron simsii HOM05D006183 ORTHO05D007844 1.2e-30 136.3 94 72.3
CSS0020724 Camellia sinensis var. sinensis HOM05D006183 ORTHO05D007844 1.5e-30 136.0 84 78.6
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 1.5e-30 136.0 80 77.5
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 2.6e-30 135.2 77 81.8
unitig_22.g6309 Utricularia gibba HOM05D006183 ORTHO05D007844 3.4e-30 134.8 96 68.8
Actinidia37559 Actinidia chinensis HOM05D006183 ORTHO05D007844 4.5e-30 134.4 77 81.8
PGSC0003DMG400014711 Solanum tuberosum HOM05D006183 ORTHO05D007844 4.5e-30 134.4 86 72.1
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 5.8e-30 134.0 78 78.2
MELO3C012834.2 Cucumis melo HOM05D006183 ORTHO05D007844 7.6e-30 133.7 87 74.7
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 7.6e-30 133.7 81 77.8
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 7.6e-30 133.7 78 78.2
Lj1A75T44 Lonicera japonica HOM05D006183 ORTHO05D007844 9.9e-30 133.3 86 74.4
THA.LOC104814536 Tarenaya hassleriana HOM05D006183 ORTHO05D007844 9.9e-30 133.3 78 76.9
arahy.Tifrunner.gnm1.ann1.73B1UV Arachis hypogaea HOM05D006183 ORTHO05D007844 1.7e-29 132.5 71 85.9
arahy.Tifrunner.gnm1.ann1.P69TYL Arachis hypogaea HOM05D006183 ORTHO05D007844 1.7e-29 132.5 71 85.9
ClCG07G001450 Citrullus lanatus HOM05D006183 ORTHO05D007844 1.7e-29 132.5 78 78.2
CsaV3_3G028460 Cucumis sativus L. HOM05D006183 ORTHO05D007844 1.7e-29 132.5 80 76.2
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 2.2e-29 132.1 74 81.1
Sed0027453 Sechium edule HOM05D006183 ORTHO05D007844 2.9e-29 131.7 78 78.2
Thecc.01G248600 Theobroma cacao HOM05D006183 ORTHO05D007844 2.9e-29 131.7 76 77.6
CiPaw.04G191000 Carya illinoinensis HOM05D006183 ORTHO05D007844 3.8e-29 131.3 74 82.4
Ca_08753_v3 Cicer arietinum L. HOM05D006183 ORTHO05D007844 3.8e-29 131.3 89 69.7
Oeu015440.1 Olea europaea HOM05D006183 ORTHO05D007844 3.8e-29 131.3 81 76.5
PGR044G1356 Punica granatum HOM05D006183 ORTHO05D007844 3.8e-29 131.3 74 82.4
Potri.014G193500 Populus trichocarpa HOM05D006183 ORTHO05D007844 4.9e-29 131.0 93 73.1
HanXRQChr03g0066991 Helianthus annuus HOM05D006183 ORTHO05D007844 6.4e-29 130.6 77 79.2
Medtr7g098900 Medicago truncatula HOM05D006183 ORTHO05D007844 6.4e-29 130.6 100 68.0
Dinv43057 Davidia involucrata HOM05D006183 ORTHO05D007844 8.4e-29 130.2 92 68.5
Lj1A75T45 Lonicera japonica HOM05D006183 ORTHO05D007844 8.4e-29 130.2 121 57.0
QL09p042323 Quercus lobata HOM05D006183 ORTHO05D007844 8.4e-29 130.2 86 73.3
TAR636G3003 Trochodendron aralioides HOM05D006183 ORTHO05D007844 8.4e-29 130.2 119 57.1
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 1.1e-28 129.8 77 79.2
Ciclev10019299m.g Citrus clementina HOM05D006183 ORTHO05D007844 1.4e-28 129.4 73 80.8
Cc01_g17710 Coffea canephora HOM05D006183 ORTHO05D007844 1.4e-28 129.4 80 73.8
ECA248G2561 Erigeron canadensis HOM05D006183 ORTHO05D007844 1.4e-28 129.4 74 79.7
TPR.G20058 Trifolium pratense HOM05D006183 ORTHO05D007844 1.4e-28 129.4 74 78.4
vmacro02713 Vaccinium macrocarpon HOM05D006183 ORTHO05D007844 1.9e-28 129.0 74 79.7
Psat3g051320 Pisum sativum HOM05D006183 ORTHO05D007844 2.5e-28 128.6 89 70.8
Aa31LG8G17320 Aethionema arabicum HOM05D006183 ORTHO05D007844 4.2e-28 127.9 84 71.4
Peaxi162Scf00499g00067 Petunia axillaris HOM05D006183 ORTHO05D007844 4.2e-28 127.9 71 80.3
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 7.1e-28 127.1 71 80.3
Cfa002493 Carpinus fangiana HOM05D006183 ORTHO05D007844 7.1e-28 127.1 71 84.5
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 7.1e-28 127.1 71 84.5
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 7.1e-28 127.1 83 75.9
Manes.13G038900 Manihot esculenta HOM05D006183 ORTHO05D007844 7.1e-28 127.1 71 81.7
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 7.1e-28 127.1 81 75.3
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 1.2e-27 126.3 79 75.9
Sabra14G0143600 Salix brachista HOM05D006183 ORTHO05D007844 1.2e-27 126.3 74 81.1
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 1.2e-27 126.3 80 76.2
Glyma.19G169500 Glycine max HOM05D006183 ORTHO05D007844 1.6e-27 125.9 74 79.7
SGA_v2.0_scaffold1G00669 Striga asiatica HOM05D006183 ORTHO05D007844 1.6e-27 125.9 81 72.8
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 2.1e-27 125.6 90 71.1
Lalb_Chr20g0113511 Lupinus albus HOM05D006183 ORTHO05D007844 2.1e-27 125.6 74 78.4
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 2.1e-27 125.6 76 77.6
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 2.1e-27 125.6 71 80.3
AT2G20330 Arabidopsis thaliana HOM05D006183 ORTHO05D007844 2.7e-27 125.2 99 61.6
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 3.5e-27 124.8 71 80.3
PSO210G4577 Papaver somniferum HOM05D006183 ORTHO05D007844 3.5e-27 124.8 74 75.7
BcaB03g16820 Brassica carinata HOM05D006183 ORTHO05D007844 4.6e-27 124.4 74 73.0
CARHR110860 Cardamine hirsuta HOM05D006183 ORTHO05D007844 4.6e-27 124.4 73 75.3
Sp3g33570 Schrenkiella parvula HOM05D006183 ORTHO05D007844 4.6e-27 124.4 73 75.3
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 4.6e-27 124.4 97 63.9
BcaC06g36716 Brassica carinata HOM05D006183 ORTHO05D007844 1.0e-26 123.2 72 75.0
BolC7t40519H Brassica oleracea HOM05D006183 ORTHO05D007844 1.0e-26 123.2 72 75.0
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 1.0e-26 123.2 68 83.8
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 1.3e-26 122.9 80 73.8
SEGI_26680 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 1.3e-26 122.9 86 69.8
SEGI_33423 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 1.3e-26 122.9 86 69.8
AL3G53280 Arabidopsis lyrata HOM05D006183 ORTHO05D007844 1.8e-26 122.5 73 74.0
Carub.0003s3467 Capsella rubella HOM05D006183 ORTHO05D007844 1.8e-26 122.5 72 75.0
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 1.8e-26 122.5 84 67.9
Pp3c3_26410 Physcomitrium patens HOM05D006183 ORTHO05D007844 1.8e-26 122.5 78 70.5
MSTRG.18360 Avicennia marina HOM05D006183 ORTHO05D007844 2.3e-26 122.1 83 72.3
Mapoly0020s0160 Marchantia polymorpha HOM05D006183 ORTHO05D007844 2.3e-26 122.1 89 64.0
SHI26778 Sapria himalayana HOM05D006183 ORTHO05D007844 2.3e-26 122.1 80 70.0
Hund18298 Selenicereus undatus HOM05D006183 ORTHO05D007844 2.3e-26 122.1 86 66.3
C07p00800 Brassica napus HOM05D006183 ORTHO05D007844 8.7e-26 120.2 71 73.2
A07p00380 Brassica napus HOM05D006183 ORTHO05D007844 1.1e-25 119.8 71 73.2
BraA07t27830Z Brassica rapa HOM05D006183 ORTHO05D007844 1.1e-25 119.8 71 73.2
AagrBONN_evm.TU.Sc2ySwM_228.230 Anthoceros agrestis HOM05D006183 ORTHO05D007844 3.3e-25 118.2 99 61.6
Eucgr.K01415 Eucalyptus grandis HOM05D006183 ORTHO05D007844 9.6e-25 116.7 71 73.2
SMO117G0187 Selaginella moellendorffii HOM05D006183 ORTHO05D007844 3.7e-24 114.8 116 50.9
EL10Ac7g17706 Beta vulgaris HOM05D006183 ORTHO05D007844 3.1e-23 111.7 73 72.6
CBR_g29722 Chara braunii HOM05D006183 ORTHO05D007844 3.1e-23 111.7 71 67.6
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 1.9e-20 102.4 60 78.3
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 6.7e-18 94.0 53 81.1
Cre04.g217750 Chlamydomonas reinhardtii HOM05D006183 ORTHO05D007844 1.5e-17 92.8 72 48.6
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 4.3e-17 91.3 53 81.1
AUR62025425 Chenopodium quinoa HOM05D006183 ORTHO05D007844 5.7e-17 90.9 53 79.2
COL.COLO4_20954 Corchorus olitorius HOM05D006183 ORTHO05D007844 2.2e-16 89.0 50 78.0
AagrBONN_evm.TU.Sc2ySwM_117.1688 Anthoceros agrestis HOM05D006183 ORTHO05D007844 8.2e-16 87.0 54 72.2
MCO16G174 Micromonas commoda HOM05D006183 ORTHO05D007844 7.7e-14 80.5 67 46.3
FAN27G0957 Fragaria x ananassa HOM05D006183 ORTHO05D007844 1.3e-08 63.2 29 100.0
MD05G1186900 Malus domestica HOM05D006183 ORTHO05D007844 2.8e-08 62.0 29 96.6
PRCOL_00006356 Prasinoderma coloniale HOM05D006183 ORTHO05D007844 1.2e-06 56.6 94 41.5


User provided reference genes

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