Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0278291 Rosa chinensis HOM05D003112 ORTHO05D003660 2.9e-102 375.2 180 100.0
RcHm_v2.0_Chr4g0395521 Rosa chinensis HOM05D003112 ORTHO05D003660 6.0e-100 367.5 177 98.9
RcHm_v2.0_Chr4g0395531 Rosa chinensis HOM05D003112 ORTHO05D003660 1.3e-99 366.3 177 97.2
FvH4_4g04720 Fragaria vesca HOM05D003112 ORTHO05D003660 3.3e-98 361.7 177 96.0
FAN17G0040 Fragaria x ananassa HOM05D003112 ORTHO05D003660 3.3e-98 361.7 177 96.0
Prupe.1G049300 Prunus persica HOM05D003112 ORTHO05D003660 5.6e-98 360.9 177 95.5
CSS0008180 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 2.1e-97 359.0 177 94.9
Cc03_g06410 Coffea canephora HOM05D003112 ORTHO05D003660 6.2e-97 357.5 177 93.2
MSTRG.24656 Avicennia marina HOM05D003112 ORTHO05D003660 1.4e-96 356.3 177 92.7
Dinv27120 Davidia involucrata HOM05D003112 ORTHO05D003660 1.4e-96 356.3 177 93.2
MD16G1227200 Malus domestica HOM05D003112 ORTHO05D003660 1.8e-96 355.9 177 94.4
SalBow2G1480 Salvia bowleyana HOM05D003112 ORTHO05D003660 5.3e-96 354.4 177 93.2
Hma1.2p1_0112F.1_g054810 Hydrangea macrophylla HOM05D003112 ORTHO05D003660 6.9e-96 354.0 177 92.7
Manes.15G046300 Manihot esculenta HOM05D003112 ORTHO05D003660 6.9e-96 354.0 177 92.7
arahy.Tifrunner.gnm1.ann1.RMYF3V Arachis hypogaea HOM05D003112 ORTHO05D003660 9.0e-96 353.6 176 92.6
Dinv29798 Davidia involucrata HOM05D003112 ORTHO05D003660 1.2e-95 353.2 177 93.2
Oeu061871.1 Olea europaea HOM05D003112 ORTHO05D003660 2.6e-95 352.1 176 92.6
CSS0035703 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 3.4e-95 351.7 178 92.7
MD13G1222900 Malus domestica HOM05D003112 ORTHO05D003660 3.4e-95 351.7 177 93.2
TWI09G1061 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 3.4e-95 351.7 177 91.5
Rhsim04G0171200 Rhododendron simsii HOM05D003112 ORTHO05D003660 4.5e-95 351.3 178 91.0
CANSAT78G1988 Cannabis sativa HOM05D003112 ORTHO05D003660 5.8e-95 350.9 177 91.5
Nn3g19795 Nelumbo nucifera HOM05D003112 ORTHO05D003660 5.8e-95 350.9 177 91.5
Gohir.D09G059100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 9.9e-95 350.1 177 91.0
Gorai.006G073400 Gossypium raimondii HOM05D003112 ORTHO05D003660 9.9e-95 350.1 177 91.0
Psat6g107560 Pisum sativum HOM05D003112 ORTHO05D003660 9.9e-95 350.1 177 91.0
Sc19g0005580 Simmondsia chinensis HOM05D003112 ORTHO05D003660 9.9e-95 350.1 177 89.8
Glyma.17G256102 Glycine max HOM05D003112 ORTHO05D003660 1.3e-94 349.7 177 90.4
Lj3A640T23 Lonicera japonica HOM05D003112 ORTHO05D003660 1.3e-94 349.7 176 92.6
QL06p021218 Quercus lobata HOM05D003112 ORTHO05D003660 1.3e-94 349.7 175 92.6
GSVIVG01027922001 Vitis vinifera HOM05D003112 ORTHO05D003660 1.3e-94 349.7 177 92.7
GSVIVG01029978001 Vitis vinifera HOM05D003112 ORTHO05D003660 1.3e-94 349.7 176 92.0
Cpa.g.sc59.7 Carica papaya HOM05D003112 ORTHO05D003660 1.7e-94 349.4 177 89.3
Medtr1g045750 Medicago truncatula HOM05D003112 ORTHO05D003660 1.7e-94 349.4 177 91.0
Ca_11883_v3 Cicer arietinum L. HOM05D003112 ORTHO05D003660 2.2e-94 349.0 177 91.0
Ciclev10004776m.g Citrus clementina HOM05D003112 ORTHO05D003660 2.2e-94 349.0 177 90.4
CiPaw.02G106400 Carya illinoinensis HOM05D003112 ORTHO05D003660 2.9e-94 348.6 177 91.0
DCAR_027353 Daucus carota HOM05D003112 ORTHO05D003660 2.9e-94 348.6 179 89.9
Lj6g0010145 Lotus japonicus HOM05D003112 ORTHO05D003660 2.9e-94 348.6 177 91.0
TWI73G0266 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 2.9e-94 348.6 177 90.4
DCAR_024295 Daucus carota HOM05D003112 ORTHO05D003660 3.8e-94 348.2 176 91.5
Duzib151G0757 Durio zibethinus HOM05D003112 ORTHO05D003660 3.8e-94 348.2 177 90.4
Glyma.14G217300 Glycine max HOM05D003112 ORTHO05D003660 3.8e-94 348.2 177 89.8
Eucgr.H02913 Eucalyptus grandis HOM05D003112 ORTHO05D003660 4.9e-94 347.8 176 90.3
Lalb_Chr23g0271781 Lupinus albus HOM05D003112 ORTHO05D003660 4.9e-94 347.8 177 91.0
Thecc.04G265900 Theobroma cacao HOM05D003112 ORTHO05D003660 4.9e-94 347.8 177 89.8
Phvul.007G232000 Phaseolus vulgaris HOM05D003112 ORTHO05D003660 6.4e-94 347.4 177 89.3
FAN22G1113 Fragaria x ananassa HOM05D003112 ORTHO05D003660 8.4e-94 347.1 177 92.7
Hund24873 Selenicereus undatus HOM05D003112 ORTHO05D003660 8.4e-94 347.1 176 92.0
ECA248G0532 Erigeron canadensis HOM05D003112 ORTHO05D003660 1.1e-93 346.7 177 89.8
Manes.03G158200 Manihot esculenta HOM05D003112 ORTHO05D003660 1.1e-93 346.7 177 89.8
TAR633G1760 Trochodendron aralioides HOM05D003112 ORTHO05D003660 1.1e-93 346.7 177 90.4
Actinidia14607 Actinidia chinensis HOM05D003112 ORTHO05D003660 1.4e-93 346.3 177 90.4
HanXRQChr01g0023041 Helianthus annuus HOM05D003112 ORTHO05D003660 1.4e-93 346.3 177 89.3
VMungo0720G0086 Vigna mungo HOM05D003112 ORTHO05D003660 1.4e-93 346.3 177 89.8
Atru.chr4.1907 Acer truncatum HOM05D003112 ORTHO05D003660 1.9e-93 345.9 177 89.8
COL.COLO4_15976 Corchorus olitorius HOM05D003112 ORTHO05D003660 1.9e-93 345.9 177 89.3
Solyc03g005730.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 1.9e-93 345.9 177 89.8
Sopen03g001740 Solanum pennellii HOM05D003112 ORTHO05D003660 1.9e-93 345.9 177 89.8
PGSC0003DMG400013459 Solanum tuberosum HOM05D003112 ORTHO05D003660 1.9e-93 345.9 177 89.8
CiPaw.01G177200 Carya illinoinensis HOM05D003112 ORTHO05D003660 2.4e-93 345.5 177 91.0
FAN12G3900 Fragaria x ananassa HOM05D003112 ORTHO05D003660 2.4e-93 345.5 192 86.5
Potri.010G065100 Populus trichocarpa HOM05D003112 ORTHO05D003660 2.4e-93 345.5 177 89.3
Ah.04g153760 Amaranthus hybridus HOM05D003112 ORTHO05D003660 4.2e-93 344.7 177 88.1
ECA248G1257 Erigeron canadensis HOM05D003112 ORTHO05D003660 4.2e-93 344.7 176 90.9
Migut.G00571 Erythranthe guttata HOM05D003112 ORTHO05D003660 4.2e-93 344.7 177 90.4
PGR004G0234 Punica granatum HOM05D003112 ORTHO05D003660 4.2e-93 344.7 177 88.7
Ah.04g163950 Amaranthus hybridus HOM05D003112 ORTHO05D003660 5.4e-93 344.4 177 88.1
Cfa014790 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.1e-93 344.0 175 90.9
Aqoxy5G00139 Aquilegia oxysepala HOM05D003112 ORTHO05D003660 9.3e-93 343.6 177 88.1
CAN.G638.35 Capsicum annuum HOM05D003112 ORTHO05D003660 1.2e-92 343.2 176 89.8
Rhsim07G0000200 Rhododendron simsii HOM05D003112 ORTHO05D003660 1.2e-92 343.2 185 88.1
Atru.chr4.1904 Acer truncatum HOM05D003112 ORTHO05D003660 1.6e-92 342.8 177 88.7
Gohir.A09G059800 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.6e-92 342.8 177 89.3
Gorai.006G250800 Gossypium raimondii HOM05D003112 ORTHO05D003660 1.6e-92 342.8 177 88.1
HPP92_026397 Vanilla planifolia HOM05D003112 ORTHO05D003660 3.5e-92 341.7 177 86.4
Dinv19267 Davidia involucrata HOM05D003112 ORTHO05D003660 4.6e-92 341.3 177 88.1
TPR.G23961 Trifolium pratense HOM05D003112 ORTHO05D003660 6.0e-92 340.9 178 89.3
AUR62019663 Chenopodium quinoa HOM05D003112 ORTHO05D003660 1.0e-91 340.1 177 87.0
Sabra10G0042000 Salix brachista HOM05D003112 ORTHO05D003660 1.0e-91 340.1 183 86.9
Gohir.D09G228100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.3e-91 339.7 177 87.6
EL10Ac3g06677 Beta vulgaris HOM05D003112 ORTHO05D003660 2.3e-91 339.0 177 87.6
Lj3C639T4 Lonicera japonica HOM05D003112 ORTHO05D003660 2.3e-91 339.0 171 91.8
Zm00001eb230780 Zea mays HOM05D003112 ORTHO05D003660 2.3e-91 339.0 177 87.6
Os02g0125100 Oryza sativa ssp. japonica HOM05D003112 ORTHO05D003660 3.0e-91 338.6 177 87.0
Zm00001eb208760 Zea mays HOM05D003112 ORTHO05D003660 3.0e-91 338.6 177 88.1
Lalb_Chr11g0067221 Lupinus albus HOM05D003112 ORTHO05D003660 3.9e-91 338.2 177 88.1
MELO3C003344.2 Cucumis melo HOM05D003112 ORTHO05D003660 5.1e-91 337.8 177 84.7
Cfa014789 Carpinus fangiana HOM05D003112 ORTHO05D003660 6.7e-91 337.4 174 92.0
AUR62013948 Chenopodium quinoa HOM05D003112 ORTHO05D003660 8.7e-91 337.0 177 86.4
CDE09G0390 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 1.5e-90 336.3 177 88.1
ClCG09G012580 Citrullus lanatus HOM05D003112 ORTHO05D003660 1.9e-90 335.9 177 85.3
Duzib151G1146 Durio zibethinus HOM05D003112 ORTHO05D003660 1.9e-90 335.9 177 87.6
Solyc09g090900.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 2.5e-90 335.5 177 87.6
COL.COLO4_15975 Corchorus olitorius HOM05D003112 ORTHO05D003660 3.3e-90 335.1 176 87.5
CAN.G524.11 Capsicum annuum HOM05D003112 ORTHO05D003660 4.3e-90 334.7 176 88.6
Sed0016595 Sechium edule HOM05D003112 ORTHO05D003660 5.6e-90 334.3 177 84.2
PSO832G1505 Papaver somniferum HOM05D003112 ORTHO05D003660 7.4e-90 334.0 177 85.9
Aa31LG7G1680 Aethionema arabicum HOM05D003112 ORTHO05D003660 9.6e-90 333.6 177 85.3
PSO764G0258 Papaver somniferum HOM05D003112 ORTHO05D003660 1.3e-89 333.2 177 85.9
Sopen09g033880 Solanum pennellii HOM05D003112 ORTHO05D003660 1.6e-89 332.8 177 87.0
ATR0787G024 Amborella trichopoda HOM05D003112 ORTHO05D003660 3.6e-89 331.6 177 85.9
CsaV3_3G049730 Cucumis sativus L. HOM05D003112 ORTHO05D003660 3.6e-89 331.6 177 84.2
Nitab4.5_0005154g0020 Nicotiana tabacum HOM05D003112 ORTHO05D003660 4.8e-89 331.3 177 85.3
Thecc.04G265800 Theobroma cacao HOM05D003112 ORTHO05D003660 4.8e-89 331.3 177 85.9
Lj5g0009083 Lotus japonicus HOM05D003112 ORTHO05D003660 6.2e-89 330.9 177 85.9
Thhalv10024960m.g Eutrema salsugineum HOM05D003112 ORTHO05D003660 1.1e-88 330.1 177 83.6
Gorai.006G073300 Gossypium raimondii HOM05D003112 ORTHO05D003660 1.1e-88 330.1 177 86.4
THA.LOC104808742 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 1.1e-88 330.1 177 83.1
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.4e-88 329.7 176 84.1
Peaxi162Scf01044g00224 Petunia axillaris HOM05D003112 ORTHO05D003660 1.4e-88 329.7 176 85.2
Gohir.A09G059700 Gossypium hirsutum HOM05D003112 ORTHO05D003660 3.1e-88 328.6 177 85.9
AT4G13430 Arabidopsis thaliana HOM05D003112 ORTHO05D003660 4.0e-88 328.2 177 83.1
BcaC07g37364 Brassica carinata HOM05D003112 ORTHO05D003660 4.0e-88 328.2 177 82.5
C08p08140 Brassica napus HOM05D003112 ORTHO05D003660 4.0e-88 328.2 177 82.5
BolC8t47666H Brassica oleracea HOM05D003112 ORTHO05D003660 4.0e-88 328.2 177 82.5
Sp7g10990 Schrenkiella parvula HOM05D003112 ORTHO05D003660 4.0e-88 328.2 177 82.5
THA.LOC104821631 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 5.3e-88 327.8 177 82.5
Sabra08G0131800 Salix brachista HOM05D003112 ORTHO05D003660 9.0e-88 327.0 182 86.8
BcaC02g09423 Brassica carinata HOM05D003112 ORTHO05D003660 1.2e-87 326.6 177 81.9
A08p06810 Brassica napus HOM05D003112 ORTHO05D003660 1.2e-87 326.6 177 81.9
C04p42460 Brassica napus HOM05D003112 ORTHO05D003660 1.2e-87 326.6 177 81.9
BolC4t25824H Brassica oleracea HOM05D003112 ORTHO05D003660 1.2e-87 326.6 177 81.9
BraA08t32699Z Brassica rapa HOM05D003112 ORTHO05D003660 1.2e-87 326.6 177 81.9
A04p08700 Brassica napus HOM05D003112 ORTHO05D003660 1.5e-87 326.2 177 81.9
BraA04t16563Z Brassica rapa HOM05D003112 ORTHO05D003660 1.5e-87 326.2 177 81.9
CARHR219070 Cardamine hirsuta HOM05D003112 ORTHO05D003660 2.0e-87 325.9 177 82.5
Carub.0007s2912 Capsella rubella HOM05D003112 ORTHO05D003660 2.6e-87 325.5 177 81.9
Glyma.20G199600 Glycine max HOM05D003112 ORTHO05D003660 2.6e-87 325.5 177 85.9
Gohir.D09G059000 Gossypium hirsutum HOM05D003112 ORTHO05D003660 4.5e-87 324.7 177 85.3
HanXRQChr14g0434771 Helianthus annuus HOM05D003112 ORTHO05D003660 4.5e-87 324.7 177 83.6
arahy.Tifrunner.gnm1.ann1.F7U1GP Arachis hypogaea HOM05D003112 ORTHO05D003660 7.6e-87 323.9 177 83.1
arahy.Tifrunner.gnm1.ann1.K9LPZT Arachis hypogaea HOM05D003112 ORTHO05D003660 7.6e-87 323.9 177 83.1
TPR.G18564 Trifolium pratense HOM05D003112 ORTHO05D003660 2.2e-86 322.4 177 83.1
BcaB04g17692 Brassica carinata HOM05D003112 ORTHO05D003660 8.4e-86 320.5 177 81.4
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 8.4e-86 320.5 185 81.6
HanXRQChr14g0434761 Helianthus annuus HOM05D003112 ORTHO05D003660 1.1e-85 320.1 177 81.9
Lj3A639T17 Lonicera japonica HOM05D003112 ORTHO05D003660 4.2e-85 318.2 179 84.9
ATR0787G215 Amborella trichopoda HOM05D003112 ORTHO05D003660 1.6e-84 316.2 174 83.3
AagrBONN_evm.TU.Sc2ySwM_368.2484 Anthoceros agrestis HOM05D003112 ORTHO05D003660 2.7e-84 315.5 177 83.1
Lsat_1_v5_gn_1_75540 Lactuca sativa HOM05D003112 ORTHO05D003660 2.7e-84 315.5 162 90.7
SEGI_32008 Sequoiadendron giganteum HOM05D003112 ORTHO05D003660 1.8e-83 312.8 177 79.7
AL9U10130 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 3.0e-83 312.0 211 70.1
Nn1g02981 Nelumbo nucifera HOM05D003112 ORTHO05D003660 6.7e-83 310.8 176 84.1
Pp3c4_11270 Physcomitrium patens HOM05D003112 ORTHO05D003660 6.7e-83 310.8 177 79.7
Peaxi162Scf45037g00004 Petunia axillaris HOM05D003112 ORTHO05D003660 1.6e-81 306.2 220 69.5
unitig_736.g22485 Utricularia gibba HOM05D003112 ORTHO05D003660 2.1e-81 305.8 177 81.4
Nitab4.5_0001041g0170 Nicotiana tabacum HOM05D003112 ORTHO05D003660 5.3e-80 301.2 195 73.3
Lsat_1_v5_gn_2_41240 Lactuca sativa HOM05D003112 ORTHO05D003660 1.0e-78 297.0 164 84.1
Haze_11466 Corylus avellana HOM05D003112 ORTHO05D003660 2.2e-78 295.8 175 79.4
CBR_g53549 Chara braunii HOM05D003112 ORTHO05D003660 4.9e-78 294.7 177 74.0
Mapoly0081s0061 Marchantia polymorpha HOM05D003112 ORTHO05D003660 1.4e-77 293.1 177 75.1
SMO347G0250 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 1.9e-77 292.7 177 74.0
Medtr1g073200 Medicago truncatula HOM05D003112 ORTHO05D003660 4.3e-74 281.6 195 69.7
SHI00769 Sapria himalayana HOM05D003112 ORTHO05D003660 3.7e-73 278.5 177 72.3
Cre01.g004500 Chlamydomonas reinhardtii HOM05D003112 ORTHO05D003660 5.3e-72 274.6 177 66.7
SGA_v2.0_scaffold31G12624 Striga asiatica HOM05D003112 ORTHO05D003660 9.0e-72 273.9 176 76.1
vmacro08559 Vaccinium macrocarpon HOM05D003112 ORTHO05D003660 1.1e-69 266.9 132 92.4
FAN22G2242 Fragaria x ananassa HOM05D003112 ORTHO05D003660 3.0e-67 258.8 134 92.5
PGSC0003DMG401001552 Solanum tuberosum HOM05D003112 ORTHO05D003660 4.8e-65 251.5 134 87.3
PGSC0003DMG402001552 Solanum tuberosum HOM05D003112 ORTHO05D003660 4.8e-65 251.5 134 87.3
Manes.03G158100 Manihot esculenta HOM05D003112 ORTHO05D003660 1.0e-62 243.8 124 94.4
arahy.Tifrunner.gnm1.ann1.L114HI Arachis hypogaea HOM05D003112 ORTHO05D003660 1.3e-62 243.4 123 94.3
Nitab4.5_0000592g0470 Nicotiana tabacum HOM05D003112 ORTHO05D003660 2.2e-62 242.7 159 76.1
Nitab4.5_0002210g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.1e-61 240.4 159 75.5
Potri.008G172500 Populus trichocarpa HOM05D003112 ORTHO05D003660 9.4e-61 237.3 124 91.9
Gohir.A09G227100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.2e-60 236.9 127 87.4
SalBow3G1186 Salvia bowleyana HOM05D003112 ORTHO05D003660 2.1e-60 236.1 124 91.9
Nitab4.5_0001041g0160 Nicotiana tabacum HOM05D003112 ORTHO05D003660 7.9e-60 234.2 167 71.3
SalBow3G3468 Salvia bowleyana HOM05D003112 ORTHO05D003660 1.8e-59 233.0 123 91.1
Peaxi162Scf01044g00110 Petunia axillaris HOM05D003112 ORTHO05D003660 1.8e-56 223.0 150 72.7
Peaxi162Scf00242g01317 Petunia axillaris HOM05D003112 ORTHO05D003660 5.3e-56 221.5 134 82.8
SMO235G0067 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 3.2e-53 212.2 158 62.7
Peaxi162Scf01044g00008 Petunia axillaris HOM05D003112 ORTHO05D003660 5.2e-43 178.3 151 62.3
BcaB02g07721 Brassica carinata HOM05D003112 ORTHO05D003660 1.1e-37 160.6 195 50.3
Psat3g068240 Pisum sativum HOM05D003112 ORTHO05D003660 1.2e-28 130.6 75 80.0
MD13G1222600 Malus domestica HOM05D003112 ORTHO05D003660 1.0e-27 127.5 79 75.9
MBI10_g16829_MAGBIO Magnolia biondii HOM05D003112 ORTHO05D003660 1.7e-25 120.2 62 90.3
SMO347G0174 Selaginella moellendorffii HOM05D001061 ORTHO05D006881 5.9e-23 111.7 66 69.7
Zm00001eb208610 Zea mays HOM05D003112 ORTHO05D003660 7.8e-23 111.3 63 81.0
MD13G1222400 Malus domestica HOM05D003112 ORTHO05D003660 1.7e-22 110.2 51 92.2
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 4.4e-10 68.9 211 28.9
Psat7g109680 Pisum sativum HOM05D003775 ORTHO05D004314 1.4e-08 63.9 45 66.7
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.4e-08 63.2 173 30.6
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.4e-08 62.0 214 26.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.2e-07 60.8 212 26.9


User provided reference genes

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