Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 8.0e-21 102.8 52 100.0
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 6.7e-20 99.8 52 98.1
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 6.7e-20 99.8 52 98.1
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 6.7e-20 99.8 52 98.1
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 6.7e-20 99.8 52 98.1
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 6.7e-20 99.8 52 98.1
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 8.8e-20 99.4 52 96.2
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 8.8e-20 99.4 52 96.2
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 8.8e-20 99.4 52 96.2
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 96.2
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 94.2
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.0e-19 98.2 52 94.2
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 2.6e-19 97.8 52 94.2
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 3.3e-19 97.4 52 92.3
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 3.3e-19 97.4 52 92.3
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 4.4e-19 97.1 52 94.2
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 92.3
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 94.2
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 92.3
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 92.3
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 92.3
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 92.3
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 92.3
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 5.7e-19 96.7 52 92.3
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 7.5e-19 96.3 52 90.4
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 7.5e-19 96.3 52 94.2
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 7.5e-19 96.3 52 94.2
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 9.7e-19 95.9 52 92.3
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 9.7e-19 95.9 52 94.2
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 9.7e-19 95.9 52 90.4
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 88.5
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 88.5
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 92.3
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 1.3e-18 95.5 52 90.4
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 1.3e-18 95.5 51 92.2
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 1.7e-18 95.1 50 92.0
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 1.7e-18 95.1 52 92.3
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 1.7e-18 95.1 52 90.4
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 1.7e-18 95.1 52 92.3
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.7e-18 95.1 51 90.2
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 1.7e-18 95.1 52 92.3
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 1.7e-18 95.1 52 92.3
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 2.2e-18 94.7 52 90.4
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 2.2e-18 94.7 50 94.0
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 2.2e-18 94.7 52 88.5
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 2.2e-18 94.7 52 90.4
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 2.8e-18 94.4 52 86.5
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 2.8e-18 94.4 52 88.5
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 3.7e-18 94.0 52 90.4
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 3.7e-18 94.0 52 92.3
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 3.7e-18 94.0 52 90.4
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 3.7e-18 94.0 52 90.4
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 3.7e-18 94.0 52 90.4
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 4.8e-18 93.6 52 88.5
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 6.3e-18 93.2 52 88.5
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 6.3e-18 93.2 52 88.5
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 6.3e-18 93.2 52 88.5
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 6.3e-18 93.2 52 88.5
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 6.3e-18 93.2 52 88.5
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 6.3e-18 93.2 52 88.5
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 6.3e-18 93.2 52 88.5
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 8.2e-18 92.8 50 90.0
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 8.2e-18 92.8 52 86.5
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 8.2e-18 92.8 52 86.5
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 8.2e-18 92.8 52 90.4
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 1.1e-17 92.4 51 90.2
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 1.1e-17 92.4 52 86.5
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 1.4e-17 92.0 51 88.2
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.4e-17 92.0 51 88.2
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 1.4e-17 92.0 52 86.5
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 1.4e-17 92.0 52 86.5
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 1.4e-17 92.0 52 86.5
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 1.4e-17 92.0 52 88.5
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.8e-17 91.7 50 88.0
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 1.8e-17 91.7 52 88.5
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.8e-17 91.7 52 88.5
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.8e-17 91.7 52 88.5
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 2.4e-17 91.3 52 86.5
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 3.1e-17 90.9 52 88.5
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 4.1e-17 90.5 52 84.6
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 4.1e-17 90.5 52 84.6
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 4.1e-17 90.5 52 84.6
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 4.1e-17 90.5 52 84.6
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 4.1e-17 90.5 52 84.6
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 4.1e-17 90.5 52 84.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 4.1e-17 90.5 48 93.8
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 4.1e-17 90.5 52 86.5
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 7.0e-17 89.7 52 84.6
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 7.0e-17 89.7 52 84.6
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 7.0e-17 89.7 52 84.6
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 7.0e-17 89.7 52 84.6
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 7.0e-17 89.7 52 84.6
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 1.6e-16 88.6 52 82.7
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 2.7e-16 87.8 49 85.7
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 2.7e-16 87.8 49 85.7
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 2.7e-16 87.8 49 85.7
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 2.7e-16 87.8 49 85.7
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 2.7e-16 87.8 49 85.7
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 2.7e-16 87.8 49 85.7
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 3.5e-16 87.4 49 85.7
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 4.5e-16 87.0 50 84.0
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 7.7e-16 86.3 69 71.0
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 1.3e-15 85.5 49 83.7
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 1.3e-15 85.5 52 82.7
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 1.7e-15 85.1 52 82.7
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 6.5e-15 83.2 50 76.0
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 1.1e-14 82.4 50 80.0
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 1.5e-11 72.0 52 65.4
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 1.0e-07 59.3 46 56.5


User provided reference genes

Program Settings