Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 6.9e-204 713.8 363 100.0
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 2.9e-202 708.4 363 98.6
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 4.8e-197 691.0 363 95.9
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 8.4e-194 680.2 363 93.9
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.1e-193 679.9 363 94.8
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.5e-193 678.7 363 94.8
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.5e-193 678.7 363 94.8
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.4e-177 626.3 363 86.5
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 8.2e-173 610.5 363 84.8
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.8e-167 592.8 363 85.7
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.2e-163 580.1 364 81.3
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.7e-160 568.9 364 80.2
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.0e-159 567.0 364 79.7
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 8.8e-159 563.9 364 78.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 7.5e-158 560.8 364 79.9
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.7e-157 559.7 364 76.6
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.8e-157 558.9 364 78.8
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 4.8e-157 558.1 380 74.7
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.1e-156 557.0 362 77.9
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.4e-156 556.6 374 76.7
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.8e-156 556.2 357 78.7
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 9.1e-156 553.9 364 76.9
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.6e-155 553.1 363 78.0
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 3.5e-155 552.0 363 77.4
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.0e-154 550.4 363 76.3
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 5.0e-154 548.1 385 72.5
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.7e-152 542.3 365 75.9
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 2.7e-152 542.3 367 75.5
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 1.0e-151 540.4 366 76.0
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 2.6e-150 535.8 364 76.6
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 4.4e-150 535.0 364 73.9
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 1.3e-149 533.5 364 74.5
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 1.3e-149 533.5 364 74.7
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 2.2e-149 532.7 364 75.5
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.3e-149 530.8 366 75.4
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 2.9e-146 522.3 364 73.6
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 6.5e-146 521.2 363 72.2
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 6.5e-146 521.2 363 73.0
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 2.5e-145 519.2 364 72.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 3.3e-145 518.8 364 73.6
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 7.2e-145 517.7 367 72.8
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 9.5e-145 517.3 365 74.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 9.5e-145 517.3 365 73.7
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.2e-144 516.9 363 71.1
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.1e-144 516.2 363 71.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.1e-144 516.2 364 73.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.1e-144 516.2 363 71.3
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 3.6e-144 515.4 364 73.4
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 3.6e-144 515.4 363 71.1
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 6.1e-144 514.6 364 73.4
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 8.0e-144 514.2 363 73.6
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 1.0e-143 513.8 364 73.1
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 1.0e-143 513.8 363 70.8
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.8e-143 513.1 364 73.1
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 6.8e-143 511.1 369 71.0
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.5e-142 510.0 361 71.7
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 2.0e-142 509.6 365 72.1
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 4.4e-142 508.4 365 72.9
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 7.5e-142 507.7 307 82.4
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 8.3e-141 504.2 365 70.4
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.8e-140 503.1 365 70.7
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 7.0e-140 501.1 356 71.6
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.0e-140 501.1 361 71.2
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.2e-140 500.7 377 73.2
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.6e-139 500.0 361 71.2
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.7e-139 499.2 364 72.3
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 3.5e-139 498.8 364 70.9
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 6.6e-138 494.6 364 71.4
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 8.6e-138 494.2 363 68.9
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.1e-137 493.8 363 71.1
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.3e-137 492.3 337 72.4
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 4.3e-137 491.9 363 70.8
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.8e-136 489.2 365 69.0
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.9e-135 484.2 364 69.5
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 4.4e-134 481.9 364 69.2
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 7.5e-134 481.1 364 70.1
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 7.5e-134 481.1 365 69.6
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 7.5e-134 481.1 356 71.1
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.3e-133 480.3 366 68.0
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.7e-133 478.8 363 69.1
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 6.4e-133 478.0 365 69.0
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 8.3e-133 477.6 363 68.6
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.1e-132 477.2 365 69.0
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.1e-132 477.2 365 69.9
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.4e-132 476.1 390 63.6
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 5.4e-132 474.9 363 68.6
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.3e-130 470.3 371 67.9
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 3.9e-130 468.8 390 64.6
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 3.3e-129 465.7 364 68.4
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 8.0e-128 461.1 319 74.6
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.1e-127 460.7 364 68.7
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.7e-125 452.2 362 66.6
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 2.7e-123 446.0 333 70.3
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.8e-119 433.3 366 62.3
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 2.0e-118 429.9 360 63.1
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.4e-116 423.7 363 63.6
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.0e-114 417.5 302 71.9
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 3.0e-114 416.0 277 75.5
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.5e-113 413.7 378 60.1
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 8.1e-112 407.9 360 60.8
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.6e-110 402.9 367 59.4
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 7.6e-110 401.4 340 61.5
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.1e-107 393.3 371 58.5
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 3.6e-104 382.5 356 57.9
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.6e-102 376.3 384 52.6
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.9e-101 372.1 245 78.4
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.1e-99 366.7 308 60.7
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.1e-91 340.1 364 55.8
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.6e-86 323.2 366 47.8
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 4.2e-84 315.8 277 61.0
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.1e-81 307.8 360 47.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.7e-77 293.9 215 68.4
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 4.6e-75 285.8 421 43.2
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 3.7e-72 276.2 307 52.4
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.7e-69 267.3 213 63.4
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 4.6e-67 259.2 173 75.7
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 4.3e-65 252.7 167 77.2
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 8.2e-64 248.4 198 66.2
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.4e-63 246.9 308 51.6
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 6.9e-63 245.4 196 65.3
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.2e-61 240.4 170 74.7
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.8e-58 230.7 160 71.2
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 8.8e-50 201.8 199 53.3
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.3e-49 199.9 145 71.7
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.4e-49 199.5 122 83.6
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.1e-47 194.9 122 82.0
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 1.7e-45 187.6 165 63.6
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 8.5e-45 185.3 139 68.3
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.1e-43 180.6 250 44.0
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.9e-38 162.5 122 73.0
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.2e-36 156.8 141 61.0
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 9.4e-36 155.2 139 60.4
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.5e-33 147.9 176 44.9
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.0e-29 132.9 114 62.3
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.3e-24 115.9 72 79.2
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 6.3e-24 115.9 87 69.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 5.6e-20 102.8 72 73.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 9.5e-20 102.1 388 25.5
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.9e-18 95.5 77 62.3
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-13 80.9 131 37.4
Cfa025488 Carpinus fangiana HOM05D005334 ORTHO05D126475 5.4e-07 59.7 268 24.6


User provided reference genes

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