Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1372.8 709 100.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1323.9 709 95.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1304.7 709 94.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1303.1 703 95.6
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1283.1 713 93.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1282.3 712 93.4
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1267.7 705 92.9
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1258.8 709 91.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1250.7 709 90.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1249.2 709 89.8
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1245.0 709 90.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1243.0 699 90.6
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1242.3 709 89.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1237.6 701 89.9
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1234.2 709 89.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1233.0 709 89.3
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1231.5 699 90.1
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1231.5 709 89.6
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1229.9 709 89.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1227.2 699 90.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1225.7 705 89.1
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 701 88.7
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1216.4 701 88.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1215.7 701 88.4
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1214.9 709 89.0
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1213.0 705 87.5
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1212.6 709 87.7
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1211.4 709 87.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1211.4 688 90.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1211.1 709 87.6
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1211.1 701 88.3
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1206.4 688 90.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1203.7 709 86.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1202.6 695 88.6
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1200.7 699 88.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 687 88.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 687 88.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 687 88.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1198.7 715 86.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1198.3 695 88.5
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 671 90.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1191.4 715 86.7
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1191.0 697 87.8
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 685 88.2
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 737 83.2
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1185.6 694 87.3
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 736 84.1
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 692 86.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 685 88.0
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1182.5 732 84.4
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1177.2 697 87.2
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1176.0 689 87.8
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1174.1 709 85.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1173.3 693 87.2
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 692 86.0
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1171.8 697 84.8
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1171.4 715 85.3
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 695 85.3
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 695 85.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 709 86.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 698 86.8
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 694 86.7
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 726 82.5
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 687 86.6
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 699 83.8
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 699 83.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 699 83.8
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 699 83.7
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 699 83.7
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 702 83.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 691 85.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 699 86.6
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 699 83.4
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 699 83.4
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 703 83.9
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 697 85.2
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 699 83.4
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 700 83.3
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 709 82.5
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 694 84.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 697 82.8
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 690 84.2
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 699 82.3
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 668 85.9
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 770 77.3
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 692 83.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 740 78.9
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 686 84.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 697 81.9
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 721 80.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 696 80.7
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1110.1 683 82.9
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 741 77.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 703 79.8
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1090.9 740 77.3
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1082.4 666 83.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 9.0e-309 1063.1 690 78.3
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.5e-306 1053.9 716 76.0
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 8.8e-304 1046.6 747 72.2
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 4.2e-290 1001.1 620 81.6
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-289 998.8 631 83.0
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.7e-286 989.2 591 85.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.3e-280 968.8 710 69.2
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.3e-280 968.8 710 69.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 9.1e-277 956.8 695 68.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.0e-275 951.0 584 82.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.0e-272 943.3 683 74.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.4e-269 932.2 697 67.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.9e-267 925.2 691 68.5
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 6.8e-264 914.1 589 80.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 8.9e-264 913.7 519 90.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 6.3e-262 907.5 566 80.6
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.5e-260 901.7 554 83.0
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 8.3e-254 880.6 675 70.8
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.7e-249 864.8 495 89.9
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.6e-228 796.6 681 59.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.0e-216 755.4 673 56.5
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.6e-207 724.5 471 83.0
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.4e-205 720.3 423 84.6
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.0e-154 550.4 328 81.4
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 4.1e-152 542.7 762 42.9
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.2e-143 514.6 755 38.4
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.1e-136 491.5 280 86.8
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.1e-131 474.9 273 86.1
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 3.3e-125 453.4 269 85.1
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.6e-119 434.5 359 62.4
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.9e-115 418.7 233 87.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.8e-114 416.0 744 35.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 5.8e-114 416.0 253 82.2
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-113 414.8 237 87.3
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-111 408.3 261 83.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.1e-107 393.7 251 83.3
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-81 308.1 183 79.8
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.2e-80 303.5 193 86.0
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.3e-76 292.0 215 69.3
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-73 280.8 148 91.2
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.4e-72 278.5 195 73.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.4e-64 251.9 192 75.0
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-60 238.8 155 66.5
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.5e-58 230.7 165 73.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 5.0e-57 226.9 170 68.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.6e-55 221.9 214 60.3
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.1e-55 221.5 180 70.6
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.3e-51 206.8 488 29.3
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.3e-49 202.2 114 92.1
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.5e-49 199.9 122 83.6
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.4e-43 180.3 111 89.2
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 3.2e-40 171.0 104 80.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.0e-38 164.5 111 75.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.6e-29 134.8 100 70.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 3.4e-29 134.4 73 93.2
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 7.5e-29 133.3 151 52.3
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.7e-28 132.1 100 68.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.7e-28 132.1 100 68.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.1e-27 127.5 81 79.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.0e-26 125.2 93 72.0
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.8e-22 112.1 118 54.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 5.8e-21 107.1 69 72.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.4e-19 100.5 63 77.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-18 99.4 57 84.2
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.0e-17 96.3 93 55.9
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.0e-17 94.7 59 79.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 5.0e-17 94.0 77 64.9
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.5e-16 92.4 65 75.4
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.1e-15 88.6 62 75.8
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-12 79.0 62 69.4
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.7e-12 79.0 78 52.6
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 8.3e-12 76.6 46 78.3
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 7.8e-10 70.1 40 90.0
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 2.3e-06 58.5 31 87.1


User provided reference genes

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