Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0080771 Rosa chinensis HOM05D001410 ORTHO05D015240 9.5e-18 92.4 46 100.0
RcHm_v2.0_Chr1g0313171 Rosa chinensis HOM05D001410 ORTHO05D015240 9.9e-15 82.4 39 100.0
RcHm_v2.0_Chr4g0427891 Rosa chinensis HOM05D001410 ORTHO05D003969 4.1e-13 77.0 35 100.0
FvH4_4g21680 Fragaria vesca HOM05D001410 ORTHO05D003969 5.4e-13 76.6 38 92.1
FAN12G1773 Fragaria x ananassa HOM05D001410 ORTHO05D003969 5.4e-13 76.6 38 92.1
FAN17G1356 Fragaria x ananassa HOM05D001410 ORTHO05D003969 5.4e-13 76.6 38 92.1
TWI14G1260 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 1.6e-12 75.1 38 89.5
Actinidia21341 Actinidia chinensis HOM05D001410 ORTHO05D015240 2.1e-12 74.7 38 86.8
Aa31LG10G16100 Aethionema arabicum HOM05D001410 ORTHO05D003969 2.1e-12 74.7 38 86.8
MD16G1134100 Malus domestica HOM05D001410 ORTHO05D003969 2.1e-12 74.7 35 94.3
AL5G44840 Arabidopsis lyrata HOM05D001410 ORTHO05D003969 2.7e-12 74.3 38 86.8
Dinv12081 Davidia involucrata HOM05D001410 ORTHO05D003969 2.7e-12 74.3 38 89.5
FAN07G2033 Fragaria x ananassa HOM05D001410 ORTHO05D003969 2.7e-12 74.3 38 89.5
MD13G1156800 Malus domestica HOM05D001410 ORTHO05D003969 2.7e-12 74.3 35 94.3
Actinidia06405 Actinidia chinensis HOM05D001410 ORTHO05D003969 3.5e-12 73.9 38 86.8
Dinv33171 Davidia involucrata HOM05D001410 ORTHO05D003969 3.5e-12 73.9 38 86.8
TWI32G0004 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 3.5e-12 73.9 38 86.8
TWI59G1486 Tripterygium wilfordii HOM05D001410 ORTHO05D003969 3.5e-12 73.9 38 86.8
Atru.chr4.407 Acer truncatum HOM05D001410 ORTHO05D003969 4.6e-12 73.6 38 86.8
Atru.chr5.3423 Acer truncatum HOM05D001410 ORTHO05D003969 4.6e-12 73.6 38 86.8
EL10Ac3g06719 Beta vulgaris HOM05D001410 ORTHO05D003969 4.6e-12 73.6 34 97.1
AUR62035357 Chenopodium quinoa HOM05D001410 ORTHO05D003969 4.6e-12 73.6 34 97.1
AUR62035889 Chenopodium quinoa HOM05D001410 ORTHO05D003969 4.6e-12 73.6 34 97.1
Thhalv10005900m.g Eutrema salsugineum HOM05D001410 ORTHO05D003969 4.6e-12 73.6 38 84.2
Hma1.2p1_0484F.1_g162960 Hydrangea macrophylla HOM05D001410 ORTHO05D003969 4.6e-12 73.6 38 84.2
Hma1.2p1_0484F.1_g162965 Hydrangea macrophylla HOM05D001410 ORTHO05D003969 4.6e-12 73.6 38 84.2
Hund19272 Selenicereus undatus HOM05D001410 ORTHO05D003969 4.6e-12 73.6 34 97.1
BcaC07g40705 Brassica carinata HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
BcaC08g45185 Brassica carinata HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
A07p25850 Brassica napus HOM05D001410 ORTHO05D000704 6.0e-12 73.2 38 84.2
A09p54220 Brassica napus HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
C06p28090 Brassica napus HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
BolC6t37975H Brassica oleracea HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
BolC8t51286H Brassica oleracea HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
BraA07t30232Z Brassica rapa HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
BraA09t40834Z Brassica rapa HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
Carub.0005s2887 Capsella rubella HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
Cpa.g.sc285.2 Carica papaya HOM05D001410 ORTHO05D003969 6.0e-12 73.2 34 94.1
COL.COLO4_23130 Corchorus olitorius HOM05D001410 ORTHO05D003969 6.0e-12 73.2 34 94.1
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 6.0e-12 73.2 35 91.4
Sc25g0004870 Simmondsia chinensis HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 86.8
THA.LOC104817431 Tarenaya hassleriana HOM05D001410 ORTHO05D003969 6.0e-12 73.2 38 84.2
AT3G62120 Arabidopsis thaliana HOM05D001410 ORTHO05D003969 7.8e-12 72.8 38 84.2
C08p37080 Brassica napus HOM05D001410 ORTHO05D003969 7.8e-12 72.8 38 84.2
CARHR172460 Cardamine hirsuta HOM05D001410 ORTHO05D003969 7.8e-12 72.8 38 84.2
Cc05_g00870 Coffea canephora HOM05D001410 ORTHO05D003969 7.8e-12 72.8 38 84.2
Sed0015133 Sechium edule HOM05D001410 ORTHO05D003969 7.8e-12 72.8 34 94.1
Ah.04g153520 Amaranthus hybridus HOM05D001410 ORTHO05D003969 1.0e-11 72.4 34 94.1
CANSAT54G2973 Cannabis sativa HOM05D001410 ORTHO05D003969 1.0e-11 72.4 38 84.2
CDE08G1059 Ceratophyllum demersum HOM05D001410 ORTHO05D003969 1.0e-11 72.4 34 94.1
Duzib268G1550 Durio zibethinus HOM05D001410 ORTHO05D003969 1.0e-11 72.4 38 84.2
Manes.01G235100 Manihot esculenta HOM05D001410 ORTHO05D003969 1.0e-11 72.4 38 86.8
Oeu007521.3 Olea europaea HOM05D001410 ORTHO05D003969 1.0e-11 72.4 38 84.2
Oeu038081.1 Olea europaea HOM05D001410 ORTHO05D003969 1.0e-11 72.4 38 84.2
Rhsim01G0000400 Rhododendron simsii HOM05D001410 ORTHO05D003969 1.0e-11 72.4 38 84.2
Sc18g0006170 Simmondsia chinensis HOM05D001410 ORTHO05D003969 1.0e-11 72.4 34 94.1
vmacro18594 Vaccinium macrocarpon HOM05D001410 ORTHO05D003969 1.0e-11 72.4 38 84.2
GSVIVG01028250001 Vitis vinifera HOM05D001410 ORTHO05D003969 1.0e-11 72.4 34 94.1
BcaB02g07357 Brassica carinata HOM05D001410 ORTHO05D003969 1.3e-11 72.0 38 81.6
Carub.0005s2008 Capsella rubella HOM05D001410 ORTHO05D003969 1.3e-11 72.0 38 81.6
AUR62012943 Chenopodium quinoa HOM05D001410 ORTHO05D003969 1.3e-11 72.0 34 94.1
Duzib133G0171 Durio zibethinus HOM05D001410 ORTHO05D003969 1.3e-11 72.0 34 91.2
Duzib268G0962 Durio zibethinus HOM05D001410 ORTHO05D003969 1.3e-11 72.0 38 81.6
Duzib268G1140 Durio zibethinus HOM05D001410 ORTHO05D003969 1.3e-11 72.0 38 81.6
Gohir.A06G209000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 1.3e-11 72.0 34 91.2
Gohir.D06G212000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 1.3e-11 72.0 34 91.2
Gohir.D12G123600 Gossypium hirsutum HOM05D001410 ORTHO05D003969 1.3e-11 72.0 34 91.2
Gorai.008G134700 Gossypium raimondii HOM05D001410 ORTHO05D003969 1.3e-11 72.0 34 91.2
Gorai.010G254000 Gossypium raimondii HOM05D001410 ORTHO05D015240 1.3e-11 72.0 34 91.2
PGR142G3315 Punica granatum HOM05D001410 ORTHO05D003969 1.3e-11 72.0 38 84.2
Sp5g01250 Schrenkiella parvula HOM05D001410 ORTHO05D003969 1.3e-11 72.0 38 78.9
CSS0049825 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D003969 1.7e-11 71.6 35 88.6
Ca_09246_v3 Cicer arietinum L. HOM05D001410 ORTHO05D003969 1.7e-11 71.6 38 81.6
Dinv29495 Davidia involucrata HOM05D001410 ORTHO05D003969 1.7e-11 71.6 35 88.6
Lj1g0011311 Lotus japonicus HOM05D001410 ORTHO05D003969 1.7e-11 71.6 38 81.6
Thecc.01G325200 Theobroma cacao HOM05D001410 ORTHO05D003969 1.7e-11 71.6 34 88.2
ClCG01G007170 Citrullus lanatus HOM05D001410 ORTHO05D003969 2.3e-11 71.2 34 91.2
ClCG07G015700 Citrullus lanatus HOM05D001410 ORTHO05D003969 2.3e-11 71.2 34 91.2
MELO3C005193.2 Cucumis melo HOM05D001410 ORTHO05D003969 2.3e-11 71.2 34 91.2
MELO3C017711.2 Cucumis melo HOM05D001410 ORTHO05D003969 2.3e-11 71.2 34 91.2
Nn1g09397 Nelumbo nucifera HOM05D001410 ORTHO05D003969 2.3e-11 71.2 34 91.2
Nn7g37405 Nelumbo nucifera HOM05D001410 ORTHO05D003969 2.3e-11 71.2 34 91.2
Sed0023675 Sechium edule HOM05D001410 ORTHO05D003969 2.3e-11 71.2 34 91.2
SGA_v2.0_scaffold262G45927 Striga asiatica HOM05D001410 ORTHO05D003969 2.3e-11 71.2 38 86.8
TAR365G0316 Trochodendron aralioides HOM05D001410 ORTHO05D003969 2.3e-11 71.2 35 88.6
TAR633G0527 Trochodendron aralioides HOM05D001410 ORTHO05D003969 2.3e-11 71.2 38 81.6
Actinidia20965 Actinidia chinensis HOM05D001410 ORTHO05D003969 3.0e-11 70.9 38 84.2
Ciclev10019765m.g Citrus clementina HOM05D001410 ORTHO05D003969 3.0e-11 70.9 34 91.2
Ciclev10031253m.g Citrus clementina HOM05D001410 ORTHO05D003969 3.0e-11 70.9 34 91.2
Eucgr.K00563 Eucalyptus grandis HOM05D001410 ORTHO05D003969 3.0e-11 70.9 38 81.6
Potri.014G112400 Populus trichocarpa HOM05D001410 ORTHO05D003969 3.0e-11 70.9 38 84.2
Sabra14G0082700 Salix brachista HOM05D001410 ORTHO05D003969 3.0e-11 70.9 38 84.2
Gohir.A12G120000 Gossypium hirsutum HOM05D001410 ORTHO05D003969 3.9e-11 70.5 37 81.1
Lalb_Chr15g0077891 Lupinus albus HOM05D001410 ORTHO05D003969 3.9e-11 70.5 35 85.7
Migut.D02441 Erythranthe guttata HOM05D001410 ORTHO05D003969 5.1e-11 70.1 38 84.2
Lj3C841G7 Lonicera japonica HOM05D001410 ORTHO05D003969 5.1e-11 70.1 37 83.8
Nitab4.5_0000373g0210 Nicotiana tabacum HOM05D001410 ORTHO05D003969 5.1e-11 70.1 38 84.2
Nitab4.5_0011429g0010 Nicotiana tabacum HOM05D001410 ORTHO05D003969 5.1e-11 70.1 38 84.2
Potri.002G187000 Populus trichocarpa HOM05D001410 ORTHO05D003969 5.1e-11 70.1 35 88.6
Solyc06g068320.3 Solanum lycopersicum HOM05D001410 ORTHO05D003969 5.1e-11 70.1 38 84.2
Sopen03g036220 Solanum pennellii HOM05D001410 ORTHO05D003969 5.1e-11 70.1 38 84.2
Sopen06g025590 Solanum pennellii HOM05D001410 ORTHO05D003969 5.1e-11 70.1 38 84.2
PGSC0003DMG400028502 Solanum tuberosum HOM05D001410 ORTHO05D003969 5.1e-11 70.1 38 84.2
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea HOM05D001410 ORTHO05D006167 6.6e-11 69.7 38 78.9
arahy.Tifrunner.gnm1.ann1.QYSL7K Arachis hypogaea HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 78.9
CAN.G1490.15 Capsicum annuum HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 81.6
CsaV3_4G003400 Cucumis sativus L. HOM05D001410 ORTHO05D003969 6.6e-11 69.7 34 88.2
Glyma.03G224500 Glycine max HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 78.9
Glyma.19G221400 Glycine max HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 78.9
Medtr7g110660 Medicago truncatula HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 84.2
Phvul.001G218300 Phaseolus vulgaris HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 78.9
Prupe.1G103500 Prunus persica HOM05D001410 ORTHO05D003969 6.6e-11 69.7 35 85.7
PGSC0003DMG400014136 Solanum tuberosum HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 84.2
VMungo1383G1850 Vigna mungo HOM05D001410 ORTHO05D003969 6.6e-11 69.7 38 78.9
MSTRG.18762 Avicennia marina HOM05D001410 ORTHO05D003969 8.6e-11 69.3 34 91.2
MSTRG.21039 Avicennia marina HOM05D001410 ORTHO05D003969 8.6e-11 69.3 38 81.6
Migut.N02489 Erythranthe guttata HOM05D001410 ORTHO05D003969 8.6e-11 69.3 38 81.6
Eucgr.J00690 Eucalyptus grandis HOM05D001410 ORTHO05D003969 8.6e-11 69.3 38 78.9
RcHm_v2.0_Chr2g0137801 Rosa chinensis HOM05D001410 ORTHO05D003969 8.6e-11 69.3 35 91.4
unitig_27.g25116 Utricularia gibba HOM05D001410 ORTHO05D003969 8.6e-11 69.3 38 81.6
MBI14_g06389_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D003969 1.1e-10 68.9 35 85.7
Psat3g016680 Pisum sativum HOM05D001410 ORTHO05D003969 1.1e-10 68.9 38 81.6
SGA_v2.0_scaffold147G36388 Striga asiatica HOM05D001410 ORTHO05D003969 1.1e-10 68.9 38 84.2
SGA_v2.0_scaffold22G09857 Striga asiatica HOM05D001410 ORTHO05D003969 1.1e-10 68.9 38 84.2
TPR.G2469 Trifolium pratense HOM05D001410 ORTHO05D003969 1.1e-10 68.9 38 81.6
Cfa004912 Carpinus fangiana HOM05D001410 ORTHO05D003969 1.5e-10 68.6 38 76.3
CiPaw.07G125500 Carya illinoinensis HOM05D001410 ORTHO05D003969 1.5e-10 68.6 38 76.3
CiPaw.08G082700 Carya illinoinensis HOM05D001410 ORTHO05D015240 1.5e-10 68.6 34 85.3
CiPaw.13G167600 Carya illinoinensis HOM05D001410 ORTHO05D015240 1.5e-10 68.6 38 76.3
Haze_05147 Corylus avellana HOM05D001410 ORTHO05D003969 1.5e-10 68.6 38 76.3
Nitab4.5_0002322g0120 Nicotiana tabacum HOM05D001410 ORTHO05D003969 1.5e-10 68.6 38 81.6
Nitab4.5_0006185g0010 Nicotiana tabacum HOM05D001410 ORTHO05D003969 1.5e-10 68.6 38 81.6
Peaxi162Scf00045g00024 Petunia axillaris HOM05D001410 ORTHO05D003969 1.5e-10 68.6 38 81.6
Peaxi162Scf00207g00533 Petunia axillaris HOM05D001410 ORTHO05D003969 1.5e-10 68.6 38 81.6
PSO357G0154 Papaver somniferum HOM05D001410 ORTHO05D003969 1.9e-10 68.2 38 78.9
Solyc03g117330.4 Solanum lycopersicum HOM05D001410 ORTHO05D003969 1.9e-10 68.2 38 81.6
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 2.5e-10 67.8 39 79.5
QL11p011484 Quercus lobata HOM05D001410 ORTHO05D003969 2.5e-10 67.8 38 76.3
RcHm_v2.0_Chr2g0166461 Rosa chinensis HOM05D001410 ORTHO05D003969 2.5e-10 67.8 33 93.9
PSO384G2916 Papaver somniferum HOM05D001410 ORTHO05D003969 3.3e-10 67.4 38 78.9
SalBow3G3029 Salvia bowleyana HOM05D001410 ORTHO05D003969 3.3e-10 67.4 34 88.2
SalBow6G3314 Salvia bowleyana HOM05D001410 ORTHO05D003969 3.3e-10 67.4 34 88.2
QL10p022575 Quercus lobata HOM05D001410 ORTHO05D003969 5.6e-10 66.6 34 82.4
SGA_v2.0_scaffold25G10876 Striga asiatica HOM05D001410 ORTHO05D003969 9.5e-10 65.9 35 82.9
Lsat_1_v5_gn_8_103640 Lactuca sativa HOM05D001410 ORTHO05D003969 1.2e-09 65.5 38 76.3
Glyma.14G153800 Glycine max HOM05D001410 ORTHO05D015240 1.6e-09 65.1 41 68.3
Lj6A703T91 Lonicera japonica HOM05D001410 ORTHO05D003969 1.6e-09 65.1 34 82.4
FvH4_6g31250 Fragaria vesca HOM05D001410 ORTHO05D003969 2.8e-09 64.3 36 77.8
FAN14G4573 Fragaria x ananassa HOM05D001410 ORTHO05D003969 2.8e-09 64.3 36 77.8
HPP92_001179 Vanilla planifolia HOM05D001410 ORTHO05D003969 4.7e-09 63.5 35 80.0
FvH4_6g47400 Fragaria vesca HOM05D001410 ORTHO05D003969 6.2e-09 63.2 34 79.4
FAN02G1769 Fragaria x ananassa HOM05D001410 ORTHO05D003969 6.2e-09 63.2 34 79.4
FAN14G4931 Fragaria x ananassa HOM05D001410 ORTHO05D003969 6.2e-09 63.2 34 79.4
Aqoxy6G01698 Aquilegia oxysepala HOM05D001410 ORTHO05D003969 8.1e-09 62.8 38 68.4
HPP92_001947 Vanilla planifolia HOM05D001410 ORTHO05D003969 1.1e-08 62.4 35 80.0
ECA236G4070 Erigeron canadensis HOM05D001410 ORTHO05D003969 1.8e-08 61.6 34 79.4
SEGI_11320 Sequoiadendron giganteum HOM05D001410 ORTHO05D003969 1.8e-08 61.6 34 82.4
FAN09G2421 Fragaria x ananassa HOM05D001410 ORTHO05D003969 4.0e-08 60.5 34 76.5
SGA_v2.0_scaffold87G27134 Striga asiatica HOM05D001410 ORTHO05D003969 4.0e-08 60.5 38 71.1
ATR0730G099 Amborella trichopoda HOM05D001410 ORTHO05D003969 5.2e-08 60.1 34 76.5
HanXRQChr15g0480911 Helianthus annuus HOM05D001410 ORTHO05D003969 6.8e-08 59.7 34 79.4
Cfa023476 Carpinus fangiana HOM05D001410 ORTHO05D003969 2.0e-07 58.2 39 59.0
Os12g0443700 Oryza sativa ssp. japonica HOM05D001410 ORTHO05D003969 2.0e-07 58.2 34 76.5
Zm00001eb073240 Zea mays HOM05D001410 ORTHO05D003969 2.0e-07 58.2 34 76.5
Zm00001eb202580 Zea mays HOM05D001410 ORTHO05D003969 2.0e-07 58.2 34 76.5
Thhalv10011470m.g Eutrema salsugineum HOM05D001410 ORTHO05D003969 2.6e-07 57.8 38 68.4
Mapoly0025s0131 Marchantia polymorpha HOM05D001410 ORTHO05D003969 3.4e-07 57.4 34 73.5
Ah.02g126370 Amaranthus hybridus HOM05D001410 ORTHO05D003969 7.6e-07 56.2 34 67.6
AagrBONN_evm.TU.Sc2ySwM_117.618 Anthoceros agrestis HOM05D001410 ORTHO05D003969 7.6e-07 56.2 34 67.6
Pp3c2_3850 Physcomitrium patens HOM05D001410 ORTHO05D003969 9.9e-07 55.8 34 73.5
Lj6g0016572 Lotus japonicus HOM05D001410 ORTHO05D003969 1.7e-06 55.1 26 84.6
MCO14G216 Micromonas commoda HOM05D001410 ORTHO05D003969 1.7e-06 55.1 33 75.8
DCAR_002557 Daucus carota HOM05D001410 ORTHO05D003969 2.2e-06 54.7 34 67.6
AL5G29550 Arabidopsis lyrata HOM05D001410 ORTHO05D003969 4.9e-06 53.5 39 66.7
Medtr3g114570 Medicago truncatula HOM05D001410 ORTHO05D003969 6.4e-06 53.1 37 59.5
Psat5g012360 Pisum sativum HOM05D001410 ORTHO05D003969 6.4e-06 53.1 34 61.8


User provided reference genes

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