Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 9.8e-49 196.4 96 100.0
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 5.4e-47 190.7 97 97.9
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 5.4e-47 190.7 97 97.9
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 7.0e-47 190.3 96 97.9
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 7.0e-47 190.3 97 97.9
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 1.6e-46 189.1 97 96.9
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 6.6e-45 183.7 97 93.8
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 8.6e-45 183.3 96 91.7
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 1.1e-44 183.0 96 92.7
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 4.2e-44 181.0 93 94.6
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 4.2e-44 181.0 90 98.9
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 4.2e-44 181.0 97 90.7
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 5.5e-44 180.6 97 89.7
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 5.5e-44 180.6 95 91.6
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 5.5e-44 180.6 96 90.6
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 7.2e-44 180.3 96 90.6
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 9.5e-44 179.9 97 89.7
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 2.1e-43 178.7 97 90.7
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 2.1e-43 178.7 95 89.5
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 2.1e-43 178.7 97 88.7
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 2.1e-43 178.7 96 91.7
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 2.8e-43 178.3 93 93.5
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 3.6e-43 177.9 97 88.7
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 3.6e-43 177.9 96 89.6
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 3.6e-43 177.9 97 87.6
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 3.6e-43 177.9 97 90.7
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 4.7e-43 177.6 95 92.6
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 6.1e-43 177.2 93 90.3
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 6.1e-43 177.2 97 90.7
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 6.1e-43 177.2 97 88.7
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 1.0e-42 176.4 94 90.4
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 1.0e-42 176.4 97 88.7
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 1.0e-42 176.4 97 88.7
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.4e-42 176.0 97 89.7
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 1.4e-42 176.0 96 88.5
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 1.4e-42 176.0 97 85.6
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 1.8e-42 175.6 97 87.6
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 2.3e-42 175.3 96 87.5
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 2.3e-42 175.3 96 87.5
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 4.0e-42 174.5 96 87.5
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 4.0e-42 174.5 97 87.6
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 4.0e-42 174.5 96 87.5
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 5.2e-42 174.1 95 87.4
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 5.2e-42 174.1 96 86.5
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 6.8e-42 173.7 97 85.6
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 6.8e-42 173.7 97 85.6
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 6.8e-42 173.7 97 85.6
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 8.9e-42 173.3 96 85.4
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 8.9e-42 173.3 93 89.2
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 1.2e-41 172.9 97 86.6
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 1.2e-41 172.9 97 86.6
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 1.2e-41 172.9 97 86.6
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 2.0e-41 172.2 96 85.4
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 2.6e-41 171.8 91 90.1
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 3.4e-41 171.4 95 86.3
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 3.4e-41 171.4 97 84.5
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 82.5
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 4.4e-41 171.0 95 85.3
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 4.4e-41 171.0 97 85.6
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 4.4e-41 171.0 94 87.2
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 5.7e-41 170.6 96 82.3
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 5.7e-41 170.6 97 83.5
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 5.7e-41 170.6 93 86.0
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 7.5e-41 170.2 95 85.3
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 7.5e-41 170.2 97 84.5
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 7.5e-41 170.2 94 85.1
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 9.8e-41 169.9 91 89.0
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 9.8e-41 169.9 96 85.4
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 1.3e-40 169.5 95 85.3
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 1.3e-40 169.5 93 84.9
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.2e-40 168.7 94 85.1
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 2.2e-40 168.7 92 89.1
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 2.8e-40 168.3 93 84.9
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 2.8e-40 168.3 93 83.9
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 2.8e-40 168.3 93 83.9
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 3.7e-40 167.9 95 85.3
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 3.7e-40 167.9 97 85.6
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 3.7e-40 167.9 89 92.1
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 4.9e-40 167.5 96 85.4
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 4.9e-40 167.5 94 84.0
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 8.3e-40 166.8 93 88.2
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 8.3e-40 166.8 93 82.8
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 8.3e-40 166.8 93 82.8
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 8.3e-40 166.8 93 82.8
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 8.3e-40 166.8 93 82.8
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 1.4e-39 166.0 94 85.1
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 1.8e-39 165.6 93 84.9
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 1.8e-39 165.6 93 82.8
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 1.8e-39 165.6 94 86.2
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 3.2e-39 164.9 91 84.6
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 3.2e-39 164.9 91 84.6
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 1.6e-38 162.5 94 86.2
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 2.0e-38 162.2 93 84.9
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 2.7e-38 161.8 90 84.4
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 5.9e-38 160.6 88 87.5
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 7.8e-38 160.2 90 83.3
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.3e-37 159.5 94 80.9
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 5.0e-37 157.5 93 78.5
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.5e-36 156.0 91 80.2
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 2.5e-36 155.2 94 83.0
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 5.6e-36 154.1 94 83.0
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.2e-33 146.4 88 80.7
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.0e-33 145.6 88 80.7
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 3.4e-33 144.8 92 77.2
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 6.0e-30 134.0 86 74.4
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 2.1e-27 125.6 69 85.5
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 3.7e-24 114.8 63 88.9
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 1.1e-23 113.2 92 60.9
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 1.3e-13 79.7 40 92.5
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 8.1e-11 70.5 75 52.0
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 7.6e-09 63.9 43 72.1
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 8.4e-08 60.5 43 60.5
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 3.5e-06 55.1 76 47.4


User provided reference genes

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